Author: ruschein
Date: 2011-06-07 14:13:56 -0700 (Tue, 07 Jun 2011)
New Revision: 25665
Modified:
csplugins/trunk/ucsd/ruschein/genomespace-libs-plugin-cytoscape3/pom.xml
Log:
Working POM.
Modified:
csplugins/trunk/ucsd/ruschein/genomespace-libs-plugin-cytoscape3/pom.xml
===================================================================
--- csplugins/trunk/ucsd/ruschein/genomespace-libs-plugin-cytoscape3/pom.xml
2011-06-07 20:24:12 UTC (rev 25664)
+++ csplugins/trunk/ucsd/ruschein/genomespace-libs-plugin-cytoscape3/pom.xml
2011-06-07 21:13:56 UTC (rev 25665)
@@ -3,17 +3,15 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/maven-v4_0_0.xsd";>
<properties>
-
<bundle.symbolicName>org.cytoscape.genomespace</bundle.symbolicName>
+
<bundle.symbolicName>org.cytoscape.genomespace</bundle.symbolicName>
<bundle.namespace>org.cytoscape</bundle.namespace>
</properties>
<modelVersion>4.0.0</modelVersion>
<groupId>org.cytoscape</groupId>
- <artifactId>genomespace</artifactId>
+ <artifactId>genomespace-libs</artifactId>
<version>1.0-SNAPSHOT</version>
-
- <name>${bundle.symbolicName}
[${bundle.namespace}]</name>
-
+ <name>${bundle.symbolicName} [${bundle.namespace}]</name>
<packaging>bundle</packaging>
<build>
@@ -60,40 +58,17 @@
<version>2.3.4</version>
<configuration>
<instructions>
-
<Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName>
+
<Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName>
<Bundle-Version>${pom.version}</Bundle-Version>
- <_include>-osgi.bnd</_include>
+
<_include>-osgi.bnd</_include>
</instructions>
</configuration>
</plugin>
- <plugin>
- <artifactId>maven-assembly-plugin</artifactId>
- <version>2.2-beta-5</version>
- <configuration>
- <archive>
- <manifestEntries>
-
<Cytoscape-Plugin>cytoscape.genomespace.libs.GenomeSpaceLibsPlugin</Cytoscape-Plugin>
- </manifestEntries>
- </archive>
- <descriptors>
-
<descriptor>src/main/assembly/src.xml</descriptor>
- </descriptors>
- </configuration>
- <executions>
- <execution>
- <id>make-assembly</id>
- <phase>package</phase>
- <goals>
- <goal>single</goal>
- </goals>
- </execution>
- </executions>
- </plugin>
</plugins>
</build>
+ <!-- Links to the Cytoscape Maven repositories. -->
<repositories>
- <!-- Links to the Cytoscape Maven repositories. -->
<repository>
<id>cytoscape_snapshots</id>
<snapshots>
@@ -114,116 +89,37 @@
<name>Cytoscape Releases</name>
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url>
</repository>
- <repository>
- <id>cytoscape_thirdparty</id>
- <snapshots>
- <enabled>false</enabled>
- </snapshots>
- <releases>
- <enabled>true</enabled>
- </releases>
- <name>Cytoscape Third Party</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/</url>
- </repository>
- <!-- Other Maven repositories. -->
- <repository>
- <id>java.net</id>
- <name>Java.net</name>
- <url>http://download.java.net/maven/2/</url>
- </repository>
</repositories>
<!-- Dependencies needed to compile this project. -->
<dependencies>
<dependency>
- <groupId>commons-codec</groupId>
- <artifactId>commons-codec</artifactId>
- <version>1.3</version>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>model-api</artifactId>
+ <version>3.0.0-alpha4</version>
</dependency>
+
+ <!-- Logging -->
<dependency>
- <groupId>commons-httpclient</groupId>
- <artifactId>commons-httpclient</artifactId>
- <version>3.1</version>
+ <groupId>org.ops4j.pax.logging</groupId>
+ <artifactId>pax-logging-api</artifactId>
+ <version>1.5.2</version>
+ <scope>provided</scope>
</dependency>
+
+ <!-- dependencies specifically for unit testing -->
<dependency>
- <groupId>commons-io</groupId>
- <artifactId>commons-io</artifactId>
- <version>1.4</version>
+ <groupId>junit</groupId>
+ <artifactId>junit</artifactId>
+ <version>4.8.2</version>
+ <scope>test</scope>
</dependency>
<dependency>
- <groupId>commons-lang</groupId>
- <artifactId>commons-lang</artifactId>
- <version>2.5</version>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>test-support</artifactId>
+ <version>3.0.0-alpha2</version>
+ <scope>test</scope>
</dependency>
- <dependency>
- <groupId>commons-logging</groupId>
- <artifactId>commons-logging</artifactId>
- <version>1.1.1</version>
- </dependency>
- <dependency>
- <groupId>log4j</groupId>
- <artifactId>log4j</artifactId>
- <version>1.2.16</version>
- </dependency>
- <dependency>
- <groupId>net.java.dev.jets3t</groupId>
- <artifactId>jets3t</artifactId>
- <version>0.7.4</version>
- </dependency>
- <dependency>
- <groupId>org.codehaus.jettison</groupId>
- <artifactId>jettison</artifactId>
- <version>1.2</version>
- </dependency>
- <dependency>
- <groupId>com.sun.jersey</groupId>
- <artifactId>jersey-core</artifactId>
- <version>1.5-ea09</version>
- </dependency>
- <dependency>
- <groupId>com.sun.jersey</groupId>
- <artifactId>jersey-client</artifactId>
- <version>1.5-ea09</version>
- </dependency>
- <dependency>
- <groupId>com.sun.jersey.contribs</groupId>
- <artifactId>jersey-apache-client</artifactId>
- <version>1.5-ea09</version>
- </dependency>
- <dependency>
- <groupId>javax.ws.rs</groupId>
- <artifactId>jsr311-api</artifactId>
- <version>1.1.1</version>
- </dependency>
- <dependency>
- <groupId>org.codehaus.jackson</groupId>
- <artifactId>jackson-core-asl</artifactId>
- <version>1.5.5</version>
- </dependency>
- <dependency>
- <groupId>org.codehaus.jackson</groupId>
- <artifactId>jackson-jaxrs</artifactId>
- <version>1.5.5</version>
- </dependency>
- <dependency>
- <groupId>org.codehaus.jackson</groupId>
- <artifactId>jackson-mapper-asl</artifactId>
- <version>1.5.5</version>
- </dependency>
- <dependency>
- <groupId>org.codehaus.jackson</groupId>
- <artifactId>jackson-xc</artifactId>
- <version>1.5.5</version>
- </dependency>
- <dependency>
- <groupId>com.jamesmurty.utils</groupId>
- <artifactId>java-xmlbuilder</artifactId>
- <version>0.3</version>
- </dependency>
- <dependency>
- <groupId>stax</groupId>
- <artifactId>stax-api</artifactId>
- <version>1.0.1</version>
- </dependency>
</dependencies>
+
</project>
--
You received this message because you are subscribed to the Google Groups
"cytoscape-cvs" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/cytoscape-cvs?hl=en.
