Author: jm
Date: 2011-06-22 08:19:58 -0700 (Wed, 22 Jun 2011)
New Revision: 25876
Modified:
core3/biopax-impl/trunk/src/main/resources/META-INF/spring/bundle-context-osgi.xml
core3/biopax-impl/trunk/src/main/resources/META-INF/spring/bundle-context.xml
Log:
Fix for ticket #286: Upgraded biopax-impl to use paxtools-3.0.0
Fixed node selection behaviour which occurred because of recent changes in
event API
Modified:
core3/biopax-impl/trunk/src/main/resources/META-INF/spring/bundle-context-osgi.xml
===================================================================
---
core3/biopax-impl/trunk/src/main/resources/META-INF/spring/bundle-context-osgi.xml
2011-06-22 15:19:28 UTC (rev 25875)
+++
core3/biopax-impl/trunk/src/main/resources/META-INF/spring/bundle-context-osgi.xml
2011-06-22 15:19:58 UTC (rev 25876)
@@ -31,9 +31,6 @@
<osgi:reference id="cyNetworkViewFactoryRef"
interface="org.cytoscape.view.model.CyNetworkViewFactory" />
- <osgi:reference id="cyTableRowUpdateServiceRef"
- interface="org.cytoscape.model.CyTableRowUpdateService" />
-
<osgi:reference id="fileUtilRef"
interface="org.cytoscape.util.swing.FileUtil" />
@@ -52,6 +49,10 @@
<osgi:service ref="bioPaxCytoPanelComponent"
interface="org.cytoscape.application.swing.CytoPanelComponent"
/>
- <osgi:service ref="networkListener"
- interface="org.cytoscape.biopax.NetworkListener" />
+ <osgi:service ref="networkListener">
+ <osgi:interfaces>
+ <value>org.cytoscape.biopax.NetworkListener</value>
+
<value>org.cytoscape.model.events.RowsSetListener</value>
+ </osgi:interfaces>
+ </osgi:service>
</beans>
Modified:
core3/biopax-impl/trunk/src/main/resources/META-INF/spring/bundle-context.xml
===================================================================
---
core3/biopax-impl/trunk/src/main/resources/META-INF/spring/bundle-context.xml
2011-06-22 15:19:28 UTC (rev 25875)
+++
core3/biopax-impl/trunk/src/main/resources/META-INF/spring/bundle-context.xml
2011-06-22 15:19:58 UTC (rev 25876)
@@ -33,7 +33,7 @@
<constructor-arg ref="bioPaxFilter" />
<constructor-arg ref="taskManagerRef" />
<constructor-arg ref="launchExternalBrowser" />
- <constructor-arg ref="cySwingApplicationRef" />
+ <constructor-arg ref="cySwingApplicationRef" />
</bean>
<bean id="bioPaxDetailsPanel"
class="org.cytoscape.biopax.internal.view.BioPaxDetailsPanel">
@@ -45,6 +45,7 @@
<constructor-arg ref="cyApplicationManagerRef" />
<constructor-arg ref="cyNetworkViewManagerRef" />
<constructor-arg ref="bioPaxDetailsPanel" />
+ <constructor-arg ref="cySwingApplicationRef" />
</bean>
<bean id="networkListener"
class="org.cytoscape.biopax.internal.action.NetworkListenerImpl">
@@ -52,7 +53,6 @@
<constructor-arg ref="bioPaxContainer"/>
<constructor-arg ref="mapBioPaxToCytoscapeFactory"/>
<constructor-arg ref="cyNetworkViewManagerRef"/>
- <constructor-arg ref="cyTableRowUpdateServiceRef"/>
</bean>
<bean id="bioPaxCytoPanelComponent"
class="org.cytoscape.biopax.internal.view.BioPaxCytoPanelComponent">
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