Author: pwang
Date: 2011-06-22 17:20:35 -0700 (Wed, 22 Jun 2011)
New Revision: 25890
Modified:
core3/table-import-impl/trunk/src/main/java/org/cytoscape/tableimport/internal/reader/NetworkTableReader.java
Log:
Use inputStream instead of URL
Modified:
core3/table-import-impl/trunk/src/main/java/org/cytoscape/tableimport/internal/reader/NetworkTableReader.java
===================================================================
---
core3/table-import-impl/trunk/src/main/java/org/cytoscape/tableimport/internal/reader/NetworkTableReader.java
2011-06-23 00:20:19 UTC (rev 25889)
+++
core3/table-import-impl/trunk/src/main/java/org/cytoscape/tableimport/internal/reader/NetworkTableReader.java
2011-06-23 00:20:35 UTC (rev 25890)
@@ -71,12 +71,13 @@
public class NetworkTableReader extends AbstractGraphReader implements
TextTableReader {
protected static final String COMMENT_CHAR = "!";
protected final NetworkTableMappingParameters nmp;
- protected final URL sourceURL;
+ //protected final URL sourceURL;
protected final NetworkLineParser parser;
protected final List<Long> nodeList;
protected final List<Long> edgeList;
protected final int startLineNumber;
protected final String commentChar;
+ protected final InputStream is;
protected CyNetwork network;
@@ -91,11 +92,12 @@
* @param startLineNumber DOCUMENT ME!
* @param commentChar DOCUMENT ME!
*/
- public NetworkTableReader(final String networkName, final URL sourceURL,
+ public NetworkTableReader(final String networkName, final InputStream
is,
final NetworkTableMappingParameters nmp,
final int startLineNumber,
final String commentChar) {
super(networkName);
- this.sourceURL = sourceURL;
+ //this.sourceURL = sourceURL;
+ this.is = is;
this.nmp = nmp;
this.startLineNumber = startLineNumber;
this.nodeList = new ArrayList<Long>();
@@ -126,7 +128,7 @@
* @throws IOException DOCUMENT ME!
*/
public void readTable(CyTable table) throws IOException {
- InputStream is = null;
+ //InputStream is = null;
String line;
network.getCyRow().set("name", this.getNetworkName());
@@ -135,7 +137,7 @@
try {
BufferedReader bufRd = null;
- is = URLUtil.getInputStream(sourceURL);
+ //is = URLUtil.getInputStream(sourceURL);
try {
bufRd = new BufferedReader(new
InputStreamReader(is));
/*
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