Author: kono
Date: 2011-06-24 13:11:27 -0700 (Fri, 24 Jun 2011)
New Revision: 25924
Modified:
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/SubnetworkBuilderTask.java
Log:
Re-format only (indentation was broken). NO FUNCTIONAL CHANGE.
Modified:
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/SubnetworkBuilderTask.java
===================================================================
---
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/SubnetworkBuilderTask.java
2011-06-24 19:34:55 UTC (rev 25923)
+++
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/SubnetworkBuilderTask.java
2011-06-24 20:11:27 UTC (rev 25924)
@@ -15,43 +15,43 @@
public class SubnetworkBuilderTask extends AbstractTask {
- private static final Logger logger =
LoggerFactory.getLogger(SubnetworkBuilderTask.class);
+ private static final Logger logger =
LoggerFactory.getLogger(SubnetworkBuilderTask.class);
- private static final String USE_EXISTING_NETWORK = "Use existing network
as interactome";
- private static final String LOAD_NEW_NETWORK = "Load all known
interactions for a model organism";
+ private static final String USE_EXISTING_NETWORK = "Use existing
network as interactome";
+ private static final String LOAD_NEW_NETWORK = "Load all known
interactions for a model organism";
- @Tunable(description = "Create subnetwork from interactome")
- public ListSingleSelection<String> selection = new
ListSingleSelection<String>(LOAD_NEW_NETWORK,
- USE_EXISTING_NETWORK);
+ @Tunable(description = "Create subnetwork from interactome")
+ public ListSingleSelection<String> selection = new
ListSingleSelection<String>(LOAD_NEW_NETWORK,
+ USE_EXISTING_NETWORK);
- private final CyNetworkManager networkManager;
- private final SubnetworkBuilderUtil util;
- private final SubnetworkBuilderState state;
+ private final CyNetworkManager networkManager;
+ private final SubnetworkBuilderUtil util;
+ private final SubnetworkBuilderState state;
- public SubnetworkBuilderTask(final CyNetworkManager networkManager, final
SubnetworkBuilderUtil util) {
- this.networkManager = networkManager;
- this.util = util;
- this.state = new SubnetworkBuilderState();
- }
+ public SubnetworkBuilderTask(final CyNetworkManager networkManager,
final SubnetworkBuilderUtil util) {
+ this.networkManager = networkManager;
+ this.util = util;
+ this.state = new SubnetworkBuilderState();
+ }
- @Override
- public void run(TaskMonitor monitor) throws Exception {
-
- final String selected = selection.getSelectedValue();
+ @Override
+ public void run(TaskMonitor monitor) throws Exception {
- insertTasksAfterCurrentTask(new SearchRelatedGenesTask(util, state));
+ final String selected = selection.getSelectedValue();
- if (selected == LOAD_NEW_NETWORK) {
- insertTasksAfterCurrentTask(util.getWebServiceImportTask());
- } else if (selected == USE_EXISTING_NETWORK) {
- final Set<CyNetwork> networks = networkManager.getNetworkSet();
- if (networks.size() == 0) {
- // No network is available. Need to load new one.
- JOptionPane.showMessageDialog(null, "No network is available.
Need to load a new one.",
- "No network found", JOptionPane.ERROR_MESSAGE);
- insertTasksAfterCurrentTask(util.getWebServiceImportTask());
- }
+ insertTasksAfterCurrentTask(new SearchRelatedGenesTask(util,
state));
+
+ if (selected == LOAD_NEW_NETWORK) {
+
insertTasksAfterCurrentTask(util.getWebServiceImportTask());
+ } else if (selected == USE_EXISTING_NETWORK) {
+ final Set<CyNetwork> networks =
networkManager.getNetworkSet();
+ if (networks.size() == 0) {
+ // No network is available. Need to load new
one.
+ JOptionPane.showMessageDialog(null, "No network
is available. Need to load a new one.",
+ "No network found",
JOptionPane.ERROR_MESSAGE);
+
insertTasksAfterCurrentTask(util.getWebServiceImportTask());
+ }
+ }
+
}
-
- }
}
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