Author: jm
Date: 2011-06-30 08:53:23 -0700 (Thu, 30 Jun 2011)
New Revision: 25982
Modified:
core3/filter-impl/trunk/src/main/java/org/cytoscape/filter/internal/filters/util/FilterUtil.java
Log:
Optimized node selection code so it doesn't build up a list of nodes/edges
before changing the selection
Modified:
core3/filter-impl/trunk/src/main/java/org/cytoscape/filter/internal/filters/util/FilterUtil.java
===================================================================
---
core3/filter-impl/trunk/src/main/java/org/cytoscape/filter/internal/filters/util/FilterUtil.java
2011-06-30 15:49:34 UTC (rev 25981)
+++
core3/filter-impl/trunk/src/main/java/org/cytoscape/filter/internal/filters/util/FilterUtil.java
2011-06-30 15:53:23 UTC (rev 25982)
@@ -52,24 +52,18 @@
if (pFilter.getAdvancedSetting().isNodeChecked()&&
(pFilter.getNodeBits() != null)) {
// Select nodes
- final List<CyNode> passedNodes = new
ArrayList<CyNode>();
-
CyNode node = null;
for (int i=0; i< pFilter.getNodeBits().length(); i++) {
int next_set_bit =
pFilter.getNodeBits().nextSetBit(i);
node = nodes_list.get(next_set_bit);
-
- passedNodes.add(node);
+ node.getCyRow().set(CyNetwork.SELECTED, true);
i = next_set_bit;
}
- SelectUtil.setSelectedNodeState(passedNodes, true);
}
if (pFilter.getAdvancedSetting().isEdgeChecked()&&
(pFilter.getEdgeBits() != null)) {
// Select edges
- final List<CyEdge> passedEdges = new
ArrayList<CyEdge>();
-
CyEdge edge = null;
for (int i=0; i< edges_list.size(); i++) {
int next_set_bit =
pFilter.getEdgeBits().nextSetBit(i);
@@ -77,10 +71,9 @@
break;
}
edge = edges_list.get(next_set_bit);
- passedEdges.add(edge);
+ edge.getCyRow().set(CyNetwork.SELECTED, true);
i = next_set_bit;
}
- SelectUtil.setSelectedEdgeState(passedEdges, true);
}
// // TODO: What do we do about CyInit*?
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