Author: clopes
Date: 2011-07-08 11:57:48 -0700 (Fri, 08 Jul 2011)
New Revision: 26121
Added:
csplugins/trunk/soc/komal/ExportToCWPlugin/default.properties
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/resources/org/
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/resources/org/cytoscape/
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/resources/org/cytoscape/komal/
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/resources/org/cytoscape/komal/plugin.props
Modified:
csplugins/trunk/soc/komal/ExportToCWPlugin/
csplugins/trunk/soc/komal/ExportToCWPlugin/build.xml
csplugins/trunk/soc/komal/ExportToCWPlugin/pom.xml
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/CopyDir.java
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/ExportToCWPlugin.java
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/FileChooserDemo.java
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/GetCurrentDir.java
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/Main.java
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/OpenBrowser.java
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/SwingFileChooserDemo.java
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/WebPage.java
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/htmlpage.java
Log:
Fixed package declarations and added required plugin files.
Property changes on: csplugins/trunk/soc/komal/ExportToCWPlugin
___________________________________________________________________
Added: svn:ignore
+ local.properties
.settings
.classpath
.project
Modified: csplugins/trunk/soc/komal/ExportToCWPlugin/build.xml
===================================================================
--- csplugins/trunk/soc/komal/ExportToCWPlugin/build.xml 2011-07-08
18:47:50 UTC (rev 26120)
+++ csplugins/trunk/soc/komal/ExportToCWPlugin/build.xml 2011-07-08
18:57:48 UTC (rev 26121)
@@ -1,74 +1,29 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- You may freely edit this file. See commented blocks below for -->
-<!-- some examples of how to customize the build. -->
-<!-- (If you delete it and reopen the project it will be recreated.) -->
-<!-- By default, only the Clean and Build commands use this build script. -->
-<!-- Commands such as Run, Debug, and Test only use this build script if -->
-<!-- the Compile on Save feature is turned off for the project. -->
-<!-- You can turn off the Compile on Save (or Deploy on Save) setting -->
-<!-- in the project's Project Properties dialog box.-->
-<project name="ExportToCWPlugin" default="default" basedir=".">
- <description>Builds, tests, and runs the project
ExportToCWPlugin.</description>
- <import file="nbproject/build-impl.xml"/>
- <!--
-
- There exist several targets which are by default empty and which can be
- used for execution of your tasks. These targets are usually executed
- before and after some main targets. They are:
-
- -pre-init: called before initialization of project
properties
- -post-init: called after initialization of project
properties
- -pre-compile: called before javac compilation
- -post-compile: called after javac compilation
- -pre-compile-single: called before javac compilation of single file
- -post-compile-single: called after javac compilation of single file
- -pre-compile-test: called before javac compilation of JUnit tests
- -post-compile-test: called after javac compilation of JUnit tests
- -pre-compile-test-single: called before javac compilation of single
JUnit test
- -post-compile-test-single: called after javac compilation of single
JUunit test
- -pre-jar: called before JAR building
- -post-jar: called after JAR building
- -post-clean: called after cleaning build products
-
- (Targets beginning with '-' are not intended to be called on their own.)
-
- Example of inserting an obfuscator after compilation could look like this:
-
- <target name="-post-compile">
- <obfuscate>
- <fileset dir="${build.classes.dir}"/>
- </obfuscate>
- </target>
-
- For list of available properties check the imported
- nbproject/build-impl.xml file.
-
-
- Another way to customize the build is by overriding existing main targets.
- The targets of interest are:
-
- -init-macrodef-javac: defines macro for javac compilation
- -init-macrodef-junit: defines macro for junit execution
- -init-macrodef-debug: defines macro for class debugging
- -init-macrodef-java: defines macro for class execution
- -do-jar-with-manifest: JAR building (if you are using a manifest)
- -do-jar-without-manifest: JAR building (if you are not using a manifest)
- run: execution of project
- -javadoc-build: Javadoc generation
- test-report: JUnit report generation
-
- An example of overriding the target for project execution could look like
this:
-
- <target name="run" depends="ExportToCWPlugin-impl.jar">
- <exec dir="bin" executable="launcher.exe">
- <arg file="${dist.jar}"/>
- </exec>
- </target>
-
- Notice that the overridden target depends on the jar target and not only
on
- the compile target as the regular run target does. Again, for a list of
available
- properties which you can use, check the target you are overriding in the
- nbproject/build-impl.xml file.
-
- -->
-</project>
+<?xml version="1.0"?>
+<project name="Cytoscape Web Export" basedir="." default="install">
+
+ <!--
+ This file should be created by each user when he/she needs to
override particular values.
+ Do NOT place it under version control.
+ -->
+ <property file="local.properties"/>
+
+ <property file="default.properties"/>
+
+ <property environment="env"/>
+
+ <property name="build.dir" value="target"/>
+ <property name="cytoscape.plugin.dir" value="${cytoscape.home}/plugins"/>
+
+ <target name="install">
+ <copy todir="${cytoscape.plugin.dir}" overwrite="true">
+ <fileset dir="${build.dir}" includes="*.jar"/>
+ </copy>
+ </target>
+
+ <target name="info">
+
<echo>*******************************************************************</echo>
+ <echo>* This script installs the Cytoscape plugin
*</echo>
+
<echo>*******************************************************************</echo>
+ </target>
+
+</project>
\ No newline at end of file
Added: csplugins/trunk/soc/komal/ExportToCWPlugin/default.properties
===================================================================
--- csplugins/trunk/soc/komal/ExportToCWPlugin/default.properties
(rev 0)
+++ csplugins/trunk/soc/komal/ExportToCWPlugin/default.properties
2011-07-08 18:57:48 UTC (rev 26121)
@@ -0,0 +1,2 @@
+# Overwrite it in your local.properties file
+cytoscape.home=/Applications/Cytoscape_v2.8.1
\ No newline at end of file
Modified: csplugins/trunk/soc/komal/ExportToCWPlugin/pom.xml
===================================================================
--- csplugins/trunk/soc/komal/ExportToCWPlugin/pom.xml 2011-07-08 18:47:50 UTC
(rev 26120)
+++ csplugins/trunk/soc/komal/ExportToCWPlugin/pom.xml 2011-07-08 18:57:48 UTC
(rev 26121)
@@ -6,7 +6,6 @@
<groupId>org.cytoscape</groupId>
<artifactId>cytoscapeweb-export</artifactId>
<version>0.1-SNAPSHOT</version>
- <packaging>maven-archetype</packaging>
<name>Cytoscape Web Export Plugin</name>
<build>
@@ -20,52 +19,6 @@
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-archetype-plugin</artifactId>
- <version>2.0-alpha-5</version>
- <extensions>true</extensions>
- </plugin>
- <!--
- The point of this code is to use the archetype
we just created and
- use it to generate a project and then build the
project, which will
- test that our archetype still works.
- -->
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-invoker-plugin</artifactId>
- <version>1.5</version>
- <executions>
- <execution>
- <id>integration-test</id>
- <goals>
- <goal>install</goal>
- <goal>run</goal>
- </goals>
- </execution>
- </executions>
- <configuration>
-
<cloneProjectsTo>${project.build.directory}/it/projects</cloneProjectsTo>
- <goals>
-
<goal>org.apache.maven.plugins:maven-archetype-plugin:generate</goal>
- </goals>
-
<localRepositoryPath>${project.build.directory}/it/repo</localRepositoryPath>
- <pomIncludes>
- <pomInclude>*</pomInclude>
- </pomIncludes>
-
<projectsDirectory>${basedir}/src/it/projects</projectsDirectory>
-
<postBuildHookScript>verify.bsh</postBuildHookScript>
- <properties>
-
<archetypeArtifactId>${project.artifactId}</archetypeArtifactId>
-
<archetypeGroupId>${project.groupId}</archetypeGroupId>
-
<archetypeRepository>local</archetypeRepository>
-
<archetypeVersion>${project.version}</archetypeVersion>
- <goals>verify</goals>
-
<interactiveMode>false</interactiveMode>
- </properties>
- <streamLogs>true</streamLogs>
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-clean-plugin</artifactId>
<version>2.4.1</version>
<executions>
@@ -78,6 +31,17 @@
</execution>
</executions>
</plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-jar-plugin</artifactId>
+ <configuration>
+ <archive>
+ <manifestEntries>
+
<Cytoscape-Plugin>org.cytoscape.komal.ExportToCWPlugin</Cytoscape-Plugin>
+ </manifestEntries>
+ </archive>
+ </configuration>
+ </plugin>
</plugins>
</build>
Modified:
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/CopyDir.java
===================================================================
---
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/CopyDir.java
2011-07-08 18:47:50 UTC (rev 26120)
+++
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/CopyDir.java
2011-07-08 18:57:48 UTC (rev 26121)
@@ -1,4 +1,4 @@
-package main.java.org.cytoscape.komal;
+package org.cytoscape.komal;
import java.io.File;
Modified:
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/ExportToCWPlugin.java
===================================================================
---
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/ExportToCWPlugin.java
2011-07-08 18:47:50 UTC (rev 26120)
+++
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/ExportToCWPlugin.java
2011-07-08 18:57:48 UTC (rev 26121)
@@ -1,4 +1,4 @@
-package main.java.org.cytoscape.komal;
+package org.cytoscape.komal;
import cytoscape.CyNetwork;
import cytoscape.Cytoscape;
Modified:
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/FileChooserDemo.java
===================================================================
---
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/FileChooserDemo.java
2011-07-08 18:47:50 UTC (rev 26120)
+++
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/FileChooserDemo.java
2011-07-08 18:57:48 UTC (rev 26121)
@@ -1,5 +1,5 @@
-package exportasxgmmltrial;
+package org.cytoscape.komal;
import java.io.*;
import java.awt.*;
Modified:
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/GetCurrentDir.java
===================================================================
---
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/GetCurrentDir.java
2011-07-08 18:47:50 UTC (rev 26120)
+++
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/GetCurrentDir.java
2011-07-08 18:57:48 UTC (rev 26121)
@@ -1,4 +1,4 @@
-package main.java.org.cytoscape.komal;
+package org.cytoscape.komal;
import java.io.*;
Modified:
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/Main.java
===================================================================
---
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/Main.java
2011-07-08 18:47:50 UTC (rev 26120)
+++
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/Main.java
2011-07-08 18:57:48 UTC (rev 26121)
@@ -1,4 +1,4 @@
-package exportasxgmmltrial;
+package org.cytoscape.komal;
import java.net.*;
import java.net.URL;
Modified:
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/OpenBrowser.java
===================================================================
---
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/OpenBrowser.java
2011-07-08 18:47:50 UTC (rev 26120)
+++
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/OpenBrowser.java
2011-07-08 18:57:48 UTC (rev 26121)
@@ -1,4 +1,4 @@
-package main.java.org.cytoscape.komal;
+package org.cytoscape.komal;
import java.net.URI;
import java.awt.Desktop;
Modified:
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/SwingFileChooserDemo.java
===================================================================
---
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/SwingFileChooserDemo.java
2011-07-08 18:47:50 UTC (rev 26120)
+++
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/SwingFileChooserDemo.java
2011-07-08 18:57:48 UTC (rev 26121)
@@ -3,7 +3,7 @@
* and open the template in the editor.
*/
-package exportasxgmmltrial;
+package org.cytoscape.komal;
import java.awt.BorderLayout;
import java.awt.Insets;
Modified:
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/WebPage.java
===================================================================
---
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/WebPage.java
2011-07-08 18:47:50 UTC (rev 26120)
+++
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/WebPage.java
2011-07-08 18:57:48 UTC (rev 26121)
@@ -1,4 +1,4 @@
-package main.java.org.cytoscape.komal;
+package org.cytoscape.komal;
import java.io.*;
Modified:
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/htmlpage.java
===================================================================
---
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/htmlpage.java
2011-07-08 18:47:50 UTC (rev 26120)
+++
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/java/org/cytoscape/komal/htmlpage.java
2011-07-08 18:57:48 UTC (rev 26121)
@@ -1,4 +1,4 @@
-package main.java.org.cytoscape.komal;
+package org.cytoscape.komal;
import java.io.*;
import java.lang.*;
Added:
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/resources/org/cytoscape/komal/plugin.props
===================================================================
---
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/resources/org/cytoscape/komal/plugin.props
(rev 0)
+++
csplugins/trunk/soc/komal/ExportToCWPlugin/src/main/resources/org/cytoscape/komal/plugin.props
2011-07-08 18:57:48 UTC (rev 26121)
@@ -0,0 +1,39 @@
+#plugin.props
+
+# This props file should be filled out and included in the plugin jar file.
This props file will be used
+# to put information into the Plugin Manager about the plugin
+
+# -- The following properties are REQUIRED -- #
+
+# The plugin name that will be displayed to users, white space within name is
not allowed
+pluginName=ExportToCWPlugin
+
+# Description used to give users information about the plugin such as what it
does.
+# Html tags are encouraged for formatting purposes.
+pluginDescription=Plugin for exporting networks as a Cytoscape Web application.
+
+# Plugin version number, this must be two numbers separated by a decimlal.
Ex. 0.2, 14.03
+pluginVersion=0.1
+
+# Compatible Cytoscape version. If there are more than one version, seperate
by ",".
+cytoscapeVersion=2.8
+
+# Category, use one of the categories listed on the
http://cytoscape.org/plugins2.php site
+pluginCategory=Other
+
+# -- The following properties are OPTIONAL -- #
+
+# URL to a website that gives more information about your plugin, Ex.
http://my-lab-site.org
+projectURL=http://pinscher.ucsf.edu/cgi-bin/wikigsoc.pl#Heading28
+
+# List of authors. Note each author and institution pair are separated by a :
(colon)
+# each additional author institution pair must be separated from other pairs
bye a ; (semicolon)
+# e.g.
+# pluginAuthorsInstitutions=Sarah and Victor:ISB;Mike, Kei and Peng:UCSD
+pluginAuthorsInstitutions=Komal:GSoC
+
+# Date this plugin/plugin version was released
+releaseDate=May 1, 2011
+
+# If this plugin is never meant to be downloaded except as part of a plugin
(not common) add this property. Default is "no"
+themeOnly=no
\ No newline at end of file
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