Author: pwang
Date: 2011-07-11 11:56:34 -0700 (Mon, 11 Jul 2011)
New Revision: 26139
Modified:
core3/table-import-impl/trunk/src/main/java/org/cytoscape/tableimport/internal/ui/ImportAttributeTableTask.java
Log:
use attribute as table key
Modified:
core3/table-import-impl/trunk/src/main/java/org/cytoscape/tableimport/internal/ui/ImportAttributeTableTask.java
===================================================================
---
core3/table-import-impl/trunk/src/main/java/org/cytoscape/tableimport/internal/ui/ImportAttributeTableTask.java
2011-07-11 18:54:20 UTC (rev 26138)
+++
core3/table-import-impl/trunk/src/main/java/org/cytoscape/tableimport/internal/ui/ImportAttributeTableTask.java
2011-07-11 18:56:34 UTC (rev 26139)
@@ -35,6 +35,7 @@
import org.cytoscape.model.CyNode;
import org.cytoscape.model.CyTable;
import org.cytoscape.model.CyTableEntry;
+import org.cytoscape.tableimport.internal.reader.AttributeMappingParameters;
import org.cytoscape.tableimport.internal.reader.TextTableReader;
import org.cytoscape.tableimport.internal.reader.TextTableReader.ObjectType;
import org.cytoscape.tableimport.internal.util.CytoscapeServices;
@@ -78,12 +79,36 @@
final Class<? extends CyTableEntry> type = getMappingClass();
+
+ String primaryKey =
reader.getMappingParameter().getAttributeNames()[reader.getMappingParameter().getKeyIndex()];
+ String mappingKey =
reader.getMappingParameter().getMappingAttribute();
+
+
//System.out.println("ImportAttributrTableTask.run()...primaryKey="+
primaryKey);
+
//System.out.println("ImportAttributrTableTask.run()...mappingKey="+
mappingKey);
+
if (CytoscapeServices.netMgr.getNetworkSet().size() > 0 && type
!= null) {
- System.out.println("$$$$$$$ Mapping inserted.");
- final MapNetworkAttrTask task = new
MapNetworkAttrTask(type, table,
- CytoscapeServices.netMgr,
CytoscapeServices.appMgr);
- insertTasksAfterCurrentTask(task);
+ /*
+ * Case 1: use node ID as the key
+ */
+ if
(reader.getMappingParameter().getMappingAttribute().equals(AttributeMappingParameters.ID))
{
+ final MapNetworkAttrTask task = new
MapNetworkAttrTask(type, table,
+
CytoscapeServices.netMgr, CytoscapeServices.appMgr);
+ insertTasksAfterCurrentTask(task);
+ }
+ else {
+ /*
+ * Case 2: use an attribute as the key.
+ */
+ System.out.println("\tuse attribute as key");
+ final MapNetworkAttrTask task = new
MapNetworkAttrTask(type, table, primaryKey, mappingKey,
+ CytoscapeServices.netMgr,
CytoscapeServices.appMgr);
+ insertTasksAfterCurrentTask(task);
+
+
+ }
}
+
+
this.reader.readTable(table);
// loadAttributesInternal(table);
--
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