Author: jm
Date: 2011-07-12 13:24:53 -0700 (Tue, 12 Jul 2011)
New Revision: 26157
Modified:
core3/biopax-impl/trunk/pom.xml
core3/biopax-impl/trunk/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXAction.java
Log:
Updated dependencies and fixed compile issues with biopax-impl
Modified: core3/biopax-impl/trunk/pom.xml
===================================================================
--- core3/biopax-impl/trunk/pom.xml 2011-07-12 19:33:25 UTC (rev 26156)
+++ core3/biopax-impl/trunk/pom.xml 2011-07-12 20:24:53 UTC (rev 26157)
@@ -25,7 +25,7 @@
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>io-api</artifactId>
- <version>3.0.0-alpha3</version>
+ <version>3.0.0-alpha5-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
@@ -35,12 +35,12 @@
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>work-api</artifactId>
- <version>3.0.0-alpha3</version>
+ <version>3.0.0-alpha4-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>core-task-api</artifactId>
- <version>3.0.0-alpha3</version>
+ <version>3.0.0-alpha4-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.cytoscape</groupId>
Modified:
core3/biopax-impl/trunk/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXAction.java
===================================================================
---
core3/biopax-impl/trunk/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXAction.java
2011-07-12 19:33:25 UTC (rev 26156)
+++
core3/biopax-impl/trunk/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXAction.java
2011-07-12 20:24:53 UTC (rev 26157)
@@ -27,10 +27,13 @@
package org.cytoscape.biopax.internal.action;
+import java.awt.Component;
import java.awt.event.ActionEvent;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
+import java.util.ArrayList;
+import java.util.Collection;
import java.util.Map;
import javax.swing.event.MenuEvent;
@@ -40,6 +43,7 @@
import org.cytoscape.biopax.util.BioPaxUtil;
import org.cytoscape.model.CyNetwork;
import org.cytoscape.session.CyApplicationManager;
+import org.cytoscape.util.swing.FileChooserFilter;
import org.cytoscape.util.swing.FileUtil;
import org.cytoscape.work.TaskManager;
import org.slf4j.Logger;
@@ -82,9 +86,11 @@
*/
public void actionPerformed(ActionEvent event) {
FileUtil fileUtil = factory.getFileUtil();
- File file = fileUtil.getFile(
+ Collection<FileChooserFilter> filters = new
ArrayList<FileChooserFilter>();
+ filters.add(new FileChooserFilter("BioPAX format", "rdf"));
+ File file = fileUtil.getFile((Component) event.getSource(),
"Save BioPAX Network (experimental feature)",
- FileUtil.SAVE);
+ FileUtil.SAVE, filters);
if (file != null) {
String fileName = file.getAbsolutePath();
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