Author: ruschein
Date: 2011-08-23 09:43:55 -0700 (Tue, 23 Aug 2011)
New Revision: 26626
Modified:
core3/impl/trunk/io-impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
Log:
Small performance optimisation for large networks.
Modified:
core3/impl/trunk/io-impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
===================================================================
---
core3/impl/trunk/io-impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
2011-08-23 00:42:09 UTC (rev 26625)
+++
core3/impl/trunk/io-impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
2011-08-23 16:43:55 UTC (rev 26626)
@@ -54,12 +54,12 @@
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
+
/**
* Reader for graphs in the interactions file format. Given the filename,
* provides the graph and attributes objects constructed from the file.
*/
public class SIFNetworkReader extends AbstractNetworkReader {
-
private static final Logger logger =
LoggerFactory.getLogger(SIFNetworkReader.class);
private static final String DEF_DELIMITER = "\\s+";
@@ -97,7 +97,7 @@
String line;
final BufferedReader br = new BufferedReader(new
InputStreamReader(inputStream));
- Map<String, CyNode> nMap = new HashMap<String, CyNode>();
+ Map<String, CyNode> nMap = new HashMap<String, CyNode>(10000);
CyNetwork network = cyNetworkFactory.getInstance();
final CyTable nodeTable = network.getDefaultNodeTable();
--
You received this message because you are subscribed to the Google Groups
"cytoscape-cvs" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/cytoscape-cvs?hl=en.
