Author: ruschein
Date: 2011-08-24 16:35:48 -0700 (Wed, 24 Aug 2011)
New Revision: 26635
Modified:
core3/impl/trunk/io-impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
Log:
Performance optimisation.
Modified:
core3/impl/trunk/io-impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
===================================================================
---
core3/impl/trunk/io-impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
2011-08-24 22:21:04 UTC (rev 26634)
+++
core3/impl/trunk/io-impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
2011-08-24 23:35:48 UTC (rev 26635)
@@ -93,10 +93,11 @@
private void readInput(TaskMonitor tm) throws IOException {
this.parentTaskMonitor = tm;
- tm.setProgress(0.0);
+// tm.setProgress(0.0);
String line;
- final BufferedReader br = new BufferedReader(new
InputStreamReader(inputStream));
+ final BufferedReader br =
+ new BufferedReader(new InputStreamReader(inputStream),
128*1024);
Map<String, CyNode> nMap = new HashMap<String, CyNode>(10000);
CyNetwork network = cyNetworkFactory.getInstance();
@@ -134,14 +135,14 @@
}
br.close();
- tm.setStatusMessage("Network data loaded from data
source.\nCreating Cytoscape network...");
+// tm.setStatusMessage("Network data loaded from data
source.\nCreating Cytoscape network...");
nMap.clear();
nMap = null;
this.cyNetworks = new CyNetwork[] {network};
- tm.setProgress(1.0);
+// tm.setProgress(1.0);
logger.debug("SIF file loaded: ID = " + network.getSUID());
}
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