See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/143/>
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[INFO] org/apache/commons/logging/LogFactory.class already added, skipping [INFO] org/apache/commons/logging/impl/ already added, skipping [INFO] org/apache/commons/logging/impl/NoOpLog.class already added, skipping [INFO] org/osgi/ already added, skipping [INFO] org/osgi/service/ already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] org/cytoscape/io/ already added, skipping [INFO] org/cytoscape/io/read/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/io-impl/performance/target/io-impl-performance-3.0.0-alpha8-SNAPSHOT-jar-with-dependencies.jar> [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/io-impl/performance/pom.xml> to /var/lib/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$io-impl-performance/builds/2011-10-05_17-17-56/archive/org.cytoscape/io-impl-performance/3.0.0-alpha8-SNAPSHOT/io-impl-performance-3.0.0-alpha8-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/io-impl/performance/target/io-impl-performance-3.0.0-alpha8-SNAPSHOT.jar> to /var/lib/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$io-impl-performance/builds/2011-10-05_17-17-56/archive/org.cytoscape/io-impl-performance/3.0.0-alpha8-SNAPSHOT/io-impl-performance-3.0.0-alpha8-SNAPSHOT.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/io-impl/performance/target/io-impl-performance-3.0.0-alpha8-SNAPSHOT-sources.jar> to /var/lib/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$io-impl-performance/builds/2011-10-05_17-17-56/archive/org.cytoscape/io-impl-performance/3.0.0-alpha8-SNAPSHOT/io-impl-performance-3.0.0-alpha8-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [6.252s] [INFO] org.cytoscape.biopax-impl [org.cytoscape.biopax] .. SUCCESS [28.341s] [INFO] Command Executor .................................. SUCCESS [5.910s] [INFO] org.cytoscape.equations-impl ...................... SUCCESS [23.622s] [INFO] model-impl-parent ................................. SUCCESS [5.093s] [INFO] org.cytoscape.model-impl .......................... SUCCESS [23.148s] [INFO] viewmodel-impl-parent ............................. SUCCESS [4.098s] [INFO] org.cytoscape.viewmodel-impl ...................... SUCCESS [11.457s] [INFO] Ding Implementation Parent Pom .................... SUCCESS [0.776s] [INFO] org.cytoscape.util-intr ........................... SUCCESS [9.528s] [INFO] org.cytoscape.spacial ............................. SUCCESS [1:23.966s] [INFO] org.cytoscape.graph-render ........................ SUCCESS [9:12.635s] [INFO] org.cytoscape.ding-presentation-impl .............. SUCCESS [21.740s] [INFO] org.cytoscape.core-task-impl ...................... SUCCESS [2:41.901s] [INFO] org.cytoscape.cpath2-impl [org.cytoscape.cpath2] .. SUCCESS [21.386s] [INFO] org.cytoscape.ding-customgraphics-manager-impl .... SUCCESS [8.391s] [INFO] io-impl-parent .................................... SUCCESS [2.669s] [INFO] org.cytoscape.io-impl [org.cytoscape.io] .......... SUCCESS [1:07.776s] [INFO] event-impl-parent ................................. SUCCESS [0.973s] [INFO] org.cytoscape.event-impl .......................... SUCCESS [44.907s] [INFO] org.cytoscape.layout-impl ......................... SUCCESS [6.161s] [INFO] org.cytoscape.ding-impl-performance-debug ......... SUCCESS [2:10.851s] [INFO] org.cytoscape.editor-impl ......................... SUCCESS [16.686s] [INFO] org.cytoscape.equations-functions-impl ............ SUCCESS [36.484s] [INFO] org.cytoscape.event-impl-it ....................... SUCCESS [1:07.948s] [INFO] org.cytoscape.filter-impl [org.cytoscape.filter] .. SUCCESS [1:04.041s] [INFO] org.cytoscape.io-impl-performance ................. FAILURE [15.291s] [INFO] org.cytoscape.layout-cytoscape-impl [csplugins.layout] SKIPPED [INFO] org.cytoscape.layout-jgraph-impl [csplugins.layout] SKIPPED [INFO] org.cytoscape.layout-prefuse-impl [org.cytoscape.prefuse.layouts.internal] SKIPPED [INFO] org.cytoscape.linkout-impl [org.cytoscape.linkout.internal] SKIPPED [INFO] org.cytoscape.log-swing-impl [org.cytoscape.log] .. SKIPPED [INFO] Manual Layout ..................................... SKIPPED [INFO] NetworkAnalyzer ................................... SKIPPED [INFO] Advanced Network Merge ............................ SKIPPED [INFO] org.cytoscape.plugin-impl ......................... SKIPPED [INFO] org.cytoscape.presentation-impl [org.cytoscape.view.presentation] SKIPPED [INFO] org.cytoscape.property.internal ................... SKIPPED [INFO] org.cytoscape.psi-mi-impl [org.cytoscape.psi_mi] .. SKIPPED [INFO] org.cytoscape.sbml-impl [org.cytoscape.sbml] ...... SKIPPED [INFO] org.cytoscape.search-impl [org.cytoscape.search] .. SKIPPED [INFO] org.cytoscape.session-impl ........................ SKIPPED [INFO] Cytoscape Swing Application Impl .................. SKIPPED [INFO] Cytoscape Table Browser Implementation ............ SKIPPED [INFO] org.cytoscape.table-import-impl [org.cytoscape.tableimport] SKIPPED [INFO] org.cytoscape.vizmap-gui-impl ..................... SKIPPED [INFO] vizmap-impl-parent ................................ SKIPPED [INFO] org.cytoscape.view.vizmap-impl .................... SKIPPED [INFO] org.cytoscape.io.webservice-biomart-client-impl [org.cytoscape.io.webservice.biomart] SKIPPED [INFO] org.cytoscape.webservice-impl [org.cytoscape.webservice.internal] SKIPPED [INFO] org.cytoscape.webservice-ncbi-client-impl [org.cytoscape.webservice.ncbi] SKIPPED [INFO] work-swing-impl-parent ............................ SKIPPED [INFO] org.cytoscape.work-swing-impl ..................... SKIPPED [INFO] org.cytoscape.application-impl .................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 24:59.904s [INFO] Finished at: Wed Oct 05 17:43:10 GMT-05:00 2011 [INFO] Final Memory: 45M/116M [INFO] ------------------------------------------------------------------------ Waiting for Jenkins to finish collecting data mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-assembly-plugin:2.2:attached (make-assembly) on project io-impl-performance: Failed to create assembly: Error creating assembly archive jar-with-dependencies: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/di-util-api/pom.properties not found in /var/lib/tomcat6/.m2/repository/org/cytoscape/di-util-api/3.0.0-alpha8-SNAPSHOT/di-util-api-3.0.0-alpha8-SNAPSHOT.jar cause : Failed to create assembly: Error creating assembly archive jar-with-dependencies: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/di-util-api/pom.properties not found in /var/lib/tomcat6/.m2/repository/org/cytoscape/di-util-api/3.0.0-alpha8-SNAPSHOT/di-util-api-3.0.0-alpha8-SNAPSHOT.jar Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-assembly-plugin:2.2:attached (make-assembly) on project io-impl-performance: Failed to create assembly: Error creating assembly archive jar-with-dependencies: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/di-util-api/pom.properties not found in /var/lib/tomcat6/.m2/repository/org/cytoscape/di-util-api/3.0.0-alpha8-SNAPSHOT/di-util-api-3.0.0-alpha8-SNAPSHOT.jar at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:616) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:122) at hudson.maven.Maven3Builder.call(Maven3Builder.java:74) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) at java.util.concurrent.FutureTask.run(FutureTask.java:166) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) at java.lang.Thread.run(Thread.java:636) Caused by: org.apache.maven.plugin.MojoExecutionException: Failed to create assembly: Error creating assembly archive jar-with-dependencies: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/di-util-api/pom.properties not found in /var/lib/tomcat6/.m2/repository/org/cytoscape/di-util-api/3.0.0-alpha8-SNAPSHOT/di-util-api-3.0.0-alpha8-SNAPSHOT.jar at org.apache.maven.plugin.assembly.mojos.AbstractAssemblyMojo.execute(AbstractAssemblyMojo.java:468) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Caused by: org.apache.maven.plugin.assembly.archive.ArchiveCreationException: Error creating assembly archive jar-with-dependencies: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/di-util-api/pom.properties not found in /var/lib/tomcat6/.m2/repository/org/cytoscape/di-util-api/3.0.0-alpha8-SNAPSHOT/di-util-api-3.0.0-alpha8-SNAPSHOT.jar at org.apache.maven.plugin.assembly.archive.DefaultAssemblyArchiver.createArchive(DefaultAssemblyArchiver.java:196) at org.apache.maven.plugin.assembly.mojos.AbstractAssemblyMojo.execute(AbstractAssemblyMojo.java:409) ... 29 more Caused by: org.codehaus.plexus.archiver.ArchiverException: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/di-util-api/pom.properties not found in /var/lib/tomcat6/.m2/repository/org/cytoscape/di-util-api/3.0.0-alpha8-SNAPSHOT/di-util-api-3.0.0-alpha8-SNAPSHOT.jar at org.codehaus.plexus.archiver.AbstractArchiver.createArchive(AbstractArchiver.java:888) at org.apache.maven.plugin.assembly.archive.archiver.AssemblyProxyArchiver.createArchive(AssemblyProxyArchiver.java:512) at org.apache.maven.plugin.assembly.archive.DefaultAssemblyArchiver.createArchive(DefaultAssemblyArchiver.java:192) ... 30 more Caused by: java.io.FileNotFoundException: JAR entry META-INF/maven/org.cytoscape/di-util-api/pom.properties not found in /var/lib/tomcat6/.m2/repository/org/cytoscape/di-util-api/3.0.0-alpha8-SNAPSHOT/di-util-api-3.0.0-alpha8-SNAPSHOT.jar at sun.net.www.protocol.jar.JarURLConnection.connect(JarURLConnection.java:140) at sun.net.www.protocol.jar.JarURLConnection.getInputStream(JarURLConnection.java:150) at java.net.URL.openStream(URL.java:1029) at org.codehaus.plexus.components.io.resources.PlexusIoURLResource.getContents(PlexusIoURLResource.java:30) at org.codehaus.plexus.archiver.ArchiveEntry.getInputStream(ArchiveEntry.java:104) at org.codehaus.plexus.archiver.zip.AbstractZipArchiver.zipFile(AbstractZipArchiver.java:590) at org.codehaus.plexus.archiver.zip.AbstractZipArchiver.addResources(AbstractZipArchiver.java:426) at org.codehaus.plexus.archiver.zip.AbstractZipArchiver.createArchiveMain(AbstractZipArchiver.java:349) at org.codehaus.plexus.archiver.zip.AbstractZipArchiver.execute(AbstractZipArchiver.java:250) at org.codehaus.plexus.archiver.AbstractArchiver.createArchive(AbstractArchiver.java:871) ... 32 more Maven failed with error. 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