Author: mkirby
Date: 2011-10-07 14:19:27 -0700 (Fri, 07 Oct 2011)
New Revision: 27087

Modified:
   core3/api/trunk/io-api/src/main/java/org/cytoscape/io/BasicCyFileFilter.java
   
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/CyFileFilterProvider.java
   
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/util/RecentlyOpenedTracker.java
   core3/api/trunk/io-api/src/main/java/org/cytoscape/io/util/StreamUtil.java
   
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/write/AbstractCyWriter.java
   
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/write/VizmapWriterFactory.java
Log:
Fixed Javadoc.

Modified: 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/BasicCyFileFilter.java
===================================================================
--- 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/BasicCyFileFilter.java    
    2011-10-07 21:02:47 UTC (rev 27086)
+++ 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/BasicCyFileFilter.java    
    2011-10-07 21:19:27 UTC (rev 27087)
@@ -192,6 +192,7 @@
        /**
         * Returns a string containing the specified number of lines from the
         * beginning of the file.  This is useful for testing input streams. 
+        * @param numLines the number of lines from the beginning of the file.
         * @return a string containing the specified number of lines from the
         * beginning of the file.
         */

Modified: 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/CyFileFilterProvider.java
===================================================================
--- 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/CyFileFilterProvider.java 
    2011-10-07 21:02:47 UTC (rev 27086)
+++ 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/CyFileFilterProvider.java 
    2011-10-07 21:19:27 UTC (rev 27087)
@@ -7,7 +7,8 @@
  */
 public interface CyFileFilterProvider {
        /**
-        * Return the file filter associated with the IOFactory
+        * Return the file filter associated with the IOFactory.
+        * @return the {@link CyFileFilter} associated with the IOFactory.
         */
        CyFileFilter getCyFileFilter();
 

Modified: 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/util/RecentlyOpenedTracker.java
===================================================================
--- 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/util/RecentlyOpenedTracker.java
       2011-10-07 21:02:47 UTC (rev 27086)
+++ 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/util/RecentlyOpenedTracker.java
       2011-10-07 21:19:27 UTC (rev 27087)
@@ -19,7 +19,8 @@
        
        
        /**
-        * @returns the current list of recently opened file names
+        * Returns the current list of recently opened file names.
+        * @return the current list of recently opened file names
         */
        List<URL> getRecentlyOpenedURLs();
 
@@ -27,6 +28,7 @@
        /**
         * Adds "newURL" to the list of recently opened file names and trims the
         * list if it has exceeded its maximum length.
+        * @param newURL the URL to add to the list of recently opened file 
names.
         */
        void add(final URL newURL);
 
@@ -34,6 +36,7 @@
        /**
         * Writes the list of recently opened files to the file specified by the
         * constructor argument.
+        * @throws FileNotFoundException 
         */
        void writeOut() throws FileNotFoundException;
 

Modified: 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/util/StreamUtil.java
===================================================================
--- core3/api/trunk/io-api/src/main/java/org/cytoscape/io/util/StreamUtil.java  
2011-10-07 21:02:47 UTC (rev 27086)
+++ core3/api/trunk/io-api/src/main/java/org/cytoscape/io/util/StreamUtil.java  
2011-10-07 21:19:27 UTC (rev 27087)
@@ -30,7 +30,7 @@
        InputStream getBasicInputStream(URL source) throws IOException;
 
        /**
-        * Obtain a {@link java.net.URLConnectio} for a given {@link 
java.net.URL}.
+        * Obtain a {@link java.net.URLConnection} for a given {@link 
java.net.URL}.
         * @param source The URL from which to generate the URLConnection.
         * @return An URLConnection from the specified URL.
         */

Modified: 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/write/AbstractCyWriter.java
===================================================================
--- 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/write/AbstractCyWriter.java
   2011-10-07 21:02:47 UTC (rev 27086)
+++ 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/write/AbstractCyWriter.java
   2011-10-07 21:19:27 UTC (rev 27087)
@@ -25,6 +25,7 @@
 public abstract class AbstractCyWriter<T extends CyWriterManager> extends 
AbstractTask
        implements CyWriter
 {
+       /** The file to be written. */
        protected File outputFile;
 
        /**
@@ -101,6 +102,7 @@
         * Should return a {@link org.cytoscape.io.write.CyWriter} object for 
writing the specified file of the specified type.
         * @param filter The specific type of file to be written.
         * @param out The file that will be written.
+        * @return a {@link org.cytoscape.io.write.CyWriter} object for writing 
the specified file of the specified type.
         */
        protected abstract CyWriter getWriter(CyFileFilter filter, File out) 
throws Exception;
 

Modified: 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/write/VizmapWriterFactory.java
===================================================================
--- 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/write/VizmapWriterFactory.java
        2011-10-07 21:02:47 UTC (rev 27086)
+++ 
core3/api/trunk/io-api/src/main/java/org/cytoscape/io/write/VizmapWriterFactory.java
        2011-10-07 21:19:27 UTC (rev 27087)
@@ -40,7 +40,7 @@
 
 
 /**
- * A specialization of {@link CyWriterFactory} that allows a {@link 
org.cytoscape.view.vizmap.model.Vizmap} to
+ * A specialization of {@link CyWriterFactory} that allows a {@link 
org.cytoscape.view.vizmap.VisualStyle} to
  * be specified and written.
  */
 public interface VizmapWriterFactory extends CyWriterFactory {

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