See <http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/39/>
------------------------------------------ [...truncated 968 lines...] A corelibs/equations/src/main/java/org/cytoscape/equations/builtins/Left.java A corelibs/equations/src/main/java/org/cytoscape/equations/builtins/Tanh.java A corelibs/equations/src/main/java/org/cytoscape/equations/builtins/Upper.java A corelibs/equations/src/main/java/org/cytoscape/equations/builtins/Cosh.java A corelibs/equations/src/main/java/org/cytoscape/equations/builtins/If.java A corelibs/equations/src/main/java/org/cytoscape/equations/builtins/SList.java A corelibs/equations/src/main/java/org/cytoscape/equations/parse_tree A corelibs/equations/src/main/java/org/cytoscape/equations/parse_tree/BooleanConstantNode.java A corelibs/equations/src/main/java/org/cytoscape/equations/parse_tree/FConvNode.java A corelibs/equations/src/main/java/org/cytoscape/equations/parse_tree/UnaryOpNode.java A corelibs/equations/src/main/java/org/cytoscape/equations/parse_tree/FloatConstantNode.java A corelibs/equations/src/main/java/org/cytoscape/equations/parse_tree/Node.java A corelibs/equations/src/main/java/org/cytoscape/equations/parse_tree/StringConstantNode.java A corelibs/equations/src/main/java/org/cytoscape/equations/parse_tree/IdentNode.java A corelibs/equations/src/main/java/org/cytoscape/equations/parse_tree/BinOpNode.java A corelibs/equations/src/main/java/org/cytoscape/equations/parse_tree/FuncCallNode.java A corelibs/equations/src/main/java/org/cytoscape/equations/parse_tree/SConvNode.java A corelibs/equations/src/main/java/org/cytoscape/equations/BooleanList.java A corelibs/equations/src/main/java/org/cytoscape/equations/ArgType.java A corelibs/equations/src/main/java/org/cytoscape/equations/EqnCompiler.java A corelibs/equations/src/main/java/org/cytoscape/equations/Token.java A corelibs/equations/src/main/java/org/cytoscape/equations/EqnParserImpl.java A corelibs/equations/src/main/java/org/cytoscape/equations/FunctionUtil.java A corelibs/equations/src/main/java/org/cytoscape/equations/EquationUtil.java A corelibs/equations/src/main/java/org/cytoscape/equations/interpreter A corelibs/equations/src/main/java/org/cytoscape/equations/interpreter/Instruction.java A corelibs/equations/src/main/java/org/cytoscape/equations/interpreter/IdentDescriptor.java A corelibs/equations/src/main/java/org/cytoscape/equations/interpreter/Interpreter.java A corelibs/equations/src/main/java/org/cytoscape/equations/Function.java A corelibs/equations/src/main/java/org/cytoscape/equations/Equation.java A corelibs/equations/src/main/java/org/cytoscape/equations/LongList.java A corelibs/equations/src/main/java/org/cytoscape/equations/Parser.java A corelibs/equations/pom.xml A corelibs/render.immed A corelibs/render.immed/src A corelibs/render.immed/src/test A corelibs/render.immed/src/test/java A corelibs/render.immed/src/test/java/cytoscape A corelibs/render.immed/src/test/java/cytoscape/render A corelibs/render.immed/src/test/java/cytoscape/render/immed A corelibs/render.immed/src/test/java/cytoscape/render/immed/OldGraphGraphics.java A corelibs/render.immed/src/test/java/cytoscape/render/immed/GraphGraphicsTest.java A corelibs/render.immed/src/main A corelibs/render.immed/src/main/java A corelibs/render.immed/src/main/java/cytoscape A corelibs/render.immed/src/main/java/cytoscape/render A corelibs/render.immed/src/main/java/cytoscape/render/immed AU corelibs/render.immed/src/main/java/cytoscape/render/immed/EdgeAnchors.java AU corelibs/render.immed/src/main/java/cytoscape/render/immed/GraphGraphics.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/HexagonNodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/OctagonNodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/DiamondNodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/EllipseNodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/LegacyCustomNodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/NodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/VeeNodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/ParallelogramNodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/AbstractNodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/RectangleNodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/RoundedRectangleNodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/nodeshape/TriangleNodeShape.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/arrow A corelibs/render.immed/src/main/java/cytoscape/render/immed/arrow/DeltaArrow.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/arrow/DiamondArrow.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/arrow/ArrowheadArrow.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/arrow/NoArrow.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/arrow/HalfTopArrow.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/arrow/TeeArrow.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/arrow/Arrow.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/arrow/HalfBottomArrow.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/arrow/DiscArrow.java A corelibs/render.immed/src/main/java/cytoscape/render/immed/arrow/AbstractArrow.java A corelibs/render.immed/pom.xml A application A application/src A application/src/test A application/src/test/java A application/src/test/java/cytoscape AU application/src/test/java/cytoscape/CoreSuite.java AU application/src/test/java/cytoscape/test1.cpr AU application/src/test/java/cytoscape/test2.cpr A application/src/test/java/cytoscape/plugin A application/src/test/java/cytoscape/plugin/PluginTestXML.java A application/src/test/java/cytoscape/plugin/PluginFileReaderTest.java A application/src/test/java/cytoscape/plugin/PluginVersionUtilsTest.java A application/src/test/java/cytoscape/plugin/PluginIndexTest.java A application/src/test/java/cytoscape/plugin/DownloadableInfoTest.java A application/src/test/java/cytoscape/plugin/PluginManagerTest.java A application/src/test/java/cytoscape/plugin/PluginTrackerTest.java A application/src/test/java/cytoscape/plugin/PluginPropertiesTest.java A application/src/test/java/cytoscape/BugHideNodeEventFiringTest.java A application/src/test/java/cytoscape/BugGetCyNodeTest.java A application/src/test/java/cytoscape/CyNodeTest.java A application/src/test/java/cytoscape/visual AU application/src/test/java/cytoscape/visual/NodeAppearanceCalculatorTest.java A application/src/test/java/cytoscape/visual/TestEdgeView.java A application/src/test/java/cytoscape/visual/TestLabel.java A application/src/test/java/cytoscape/visual/TestNodeView.java A application/src/test/java/cytoscape/visual/BypassHelperTest.java AU application/src/test/java/cytoscape/visual/VizMapPropertiesTest.java A application/src/test/java/cytoscape/visual/LabelPositionTest.java A application/src/test/java/cytoscape/visual/TestNetworkView.java A application/src/test/java/cytoscape/visual/NodeAppearanceTest.java A application/src/test/java/cytoscape/visual/CalculatorPropertiesTest.java A application/src/test/java/cytoscape/visual/NodeShapeTest.java A application/src/test/java/cytoscape/visual/VisualPropertyDependencyTest.java A application/src/test/java/cytoscape/visual/VisualMappingManagerTest.java A application/src/test/java/cytoscape/visual/EdgeAppearanceCalculatorTest.java A application/src/test/java/cytoscape/visual/mappings AU application/src/test/java/cytoscape/visual/mappings/BoundaryRangeValuesTest.java AU application/src/test/java/cytoscape/visual/mappings/LinearNumberToNumberInterpolatorTest.java A application/src/test/java/cytoscape/visual/mappings/discrete AU application/src/test/java/cytoscape/visual/mappings/discrete/DiscreteMappingReaderTest.java AU application/src/test/java/cytoscape/visual/mappings/discrete/DiscreteMappingWriterTest.java A application/src/test/java/cytoscape/visual/mappings/PassthroughMappingTest.java A application/src/test/java/cytoscape/visual/mappings/continuous AU application/src/test/java/cytoscape/visual/mappings/continuous/TestContinuousMappingWriter.java AU application/src/test/java/cytoscape/visual/mappings/continuous/TestContinuousMappingReader.java AU application/src/test/java/cytoscape/visual/mappings/continuous/TestContinuousColorRangeCalculator.java AU application/src/test/java/cytoscape/visual/mappings/LinearNumberToColorInterpolatorTest.java AU application/src/test/java/cytoscape/visual/mappings/FlatInterpolatorTest.java A application/src/test/java/cytoscape/visual/mappings/MappingUtilTest.java A application/src/test/java/cytoscape/giny A application/src/test/java/cytoscape/giny/CytoscapeFingRootGraphTest.java AU application/src/test/java/cytoscape/sampleProject.pro A application/src/test/java/cytoscape/data AU application/src/test/java/cytoscape/data/networkProject.pro AU application/src/test/java/cytoscape/data/mRNAMeasurementTest.java A application/src/test/java/cytoscape/data/CyAttributesUtilsTest.java A application/src/test/java/cytoscape/data/readers A application/src/test/java/cytoscape/data/readers/CytoscapeSessionReaderTest.java AU application/src/test/java/cytoscape/data/readers/FileImporterTest.java AU application/src/test/java/cytoscape/data/readers/sample.sif AU application/src/test/java/cytoscape/data/readers/GMLReaderTest.java AU application/src/test/java/cytoscape/data/readers/degenerate.sif AU application/src/test/java/cytoscape/data/readers/multiWordProteinsFileTrailingSpaces.sif A application/src/test/java/cytoscape/data/readers/NNFReaderTest.java AU application/src/test/java/cytoscape/data/readers/TextJarReaderTest.java AU application/src/test/java/cytoscape/data/readers/CyAttributesReaderTest.java AU application/src/test/java/cytoscape/data/readers/InteractionsReaderTest.java AU application/src/test/java/cytoscape/data/readers/TextFileReaderTest.java AU application/src/test/java/cytoscape/data/readers/XGMMLReaderTest.java A application/src/test/java/cytoscape/data/readers/BookmarkReaderTest.java AU application/src/test/java/cytoscape/data/readers/multiWordProteins.sif A application/src/test/java/cytoscape/data/readers/MetadataParserTest.java AU application/src/test/java/cytoscape/data/ImportHandlerTest.java A application/src/test/java/cytoscape/data/servers AU application/src/test/java/cytoscape/data/servers/BioDataServerTest.java AU application/src/test/java/cytoscape/data/InteractionTest.java A application/src/test/java/cytoscape/data/synonyms A application/src/test/java/cytoscape/data/synonyms/AliasesTest.java AU application/src/test/java/cytoscape/data/synonyms/ThesaurusTest.java A application/src/test/java/cytoscape/data/synonyms/readers AU application/src/test/java/cytoscape/data/synonyms/readers/ThesaurusFlatFileReaderTest.java A application/src/test/java/cytoscape/data/writers AU application/src/test/java/cytoscape/data/writers/CyAttributesWriterTest.java A application/src/test/java/cytoscape/data/writers/XGMMLWriterTest.java A application/src/test/java/cytoscape/data/writers/CytoscapeSessionWriterTest.java AU application/src/test/java/cytoscape/data/writers/InteractionWriterTest.java AU application/src/test/java/cytoscape/data/SelectEventTest.java AU application/src/test/java/cytoscape/data/CyAttributesTest.java AU application/src/test/java/cytoscape/data/NetworkDataTest.java AU application/src/test/java/cytoscape/data/SelectFilterTest.java AU application/src/test/java/cytoscape/data/CyNetworkTest.java AU application/src/test/java/cytoscape/data/CyNetworkEventTest.java AU application/src/test/java/cytoscape/data/ExpressionDataTest.java A application/src/test/java/cytoscape/data/ontology A application/src/test/java/cytoscape/data/ontology/readers A application/src/test/java/cytoscape/data/ontology/readers/DBCrossReferenceReaderTest.java A application/src/test/java/cytoscape/data/ontology/readers/OBOFlatFileReaderTest.java A application/src/test/java/cytoscape/data/ontology/OntologyTest.java A application/src/test/java/cytoscape/data/attr A application/src/test/java/cytoscape/data/attr/util AU application/src/test/java/cytoscape/data/attr/util/MultiHashMapTest.java A application/src/test/java/cytoscape/data/annotation AU application/src/test/java/cytoscape/data/annotation/Utils.java AU application/src/test/java/cytoscape/data/annotation/OntologyTermTest.java AU application/src/test/java/cytoscape/data/annotation/AnnotationTest.java AU application/src/test/java/cytoscape/data/annotation/OntologyTest.java AU application/src/test/java/cytoscape/data/annotation/AnnotationAndOntologyFullTest.java AU application/src/test/java/cytoscape/data/annotation/AnnotationDescriptionTest.java A application/src/test/java/cytoscape/view AU application/src/test/java/cytoscape/view/FlagAndSelectionHandlerTest.java AU application/src/test/java/cytoscape/view/CytoscapeViewTest.java AU application/src/test/java/cytoscape/CytoscapeTest.java AU application/src/test/java/cytoscape/AllTests.java A application/src/test/java/cytoscape/util A application/src/test/java/cytoscape/util/ScalerFactoryTest.java A application/src/test/java/cytoscape/util/LinearScalerTest.java A application/src/test/java/cytoscape/util/ColorUtilTest.java A application/src/test/java/cytoscape/util/TestUtil.java A application/src/test/java/cytoscape/util/FileUtilTest.java A application/src/test/java/cytoscape/util/PropUtilTest.java AU application/src/test/java/cytoscape/util/CyFileFilterTest.java A application/src/test/java/cytoscape/util/TopologicalSortTest.java A application/src/test/java/cytoscape/util/RankScalerTest.java AU application/src/test/java/cytoscape/util/GMLFileFilterTest.java ERROR: Failed to check out http://chianti.ucsd.edu/svn/cytoscape/trunk org.tmatesoft.svn.core.SVNException: svn: REPORT /svn/!svn/vcc/default failed at org.tmatesoft.svn.core.internal.io.dav.http.HTTPConnection.request(HTTPConnection.java:291) at org.tmatesoft.svn.core.internal.io.dav.http.HTTPConnection.request(HTTPConnection.java:276) at org.tmatesoft.svn.core.internal.io.dav.http.HTTPConnection.request(HTTPConnection.java:264) at org.tmatesoft.svn.core.internal.io.dav.DAVConnection.doReport(DAVConnection.java:266) at org.tmatesoft.svn.core.internal.io.dav.DAVRepository.runReport(DAVRepository.java:1263) at org.tmatesoft.svn.core.internal.io.dav.DAVRepository.update(DAVRepository.java:820) at org.tmatesoft.svn.core.wc.SVNUpdateClient.update(SVNUpdateClient.java:564) at org.tmatesoft.svn.core.wc.SVNUpdateClient.doCheckout(SVNUpdateClient.java:922) at hudson.scm.subversion.CheckoutUpdater$1.perform(CheckoutUpdater.java:90) at hudson.scm.subversion.WorkspaceUpdater$UpdateTask.delegateTo(WorkspaceUpdater.java:136) at hudson.scm.SubversionSCM$CheckOutTask.perform(SubversionSCM.java:773) at hudson.scm.SubversionSCM$CheckOutTask.invoke(SubversionSCM.java:754) at hudson.scm.SubversionSCM$CheckOutTask.invoke(SubversionSCM.java:738) at hudson.FilePath.act(FilePath.java:785) at hudson.FilePath.act(FilePath.java:767) at hudson.scm.SubversionSCM.checkout(SubversionSCM.java:731) at hudson.scm.SubversionSCM.checkout(SubversionSCM.java:676) at hudson.model.AbstractProject.checkout(AbstractProject.java:1193) at hudson.model.AbstractBuild$AbstractRunner.checkout(AbstractBuild.java:566) at hudson.model.AbstractBuild$AbstractRunner.run(AbstractBuild.java:454) at hudson.model.Run.run(Run.java:1403) at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:478) at hudson.model.ResourceController.execute(ResourceController.java:88) at hudson.model.Executor.run(Executor.java:230) Caused by: org.tmatesoft.svn.core.SVNErrorMessage: svn: REPORT /svn/!svn/vcc/default failed at org.tmatesoft.svn.core.SVNErrorMessage.create(SVNErrorMessage.java:200) at org.tmatesoft.svn.core.SVNErrorMessage.create(SVNErrorMessage.java:146) at org.tmatesoft.svn.core.SVNErrorMessage.create(SVNErrorMessage.java:89) ... 24 more Caused by: org.tmatesoft.svn.core.SVNException: svn: REPORT request failed on '/svn/!svn/vcc/default' svn: Processing REPORT request response failed: XML document structures must start and end within the same entity. (/svn/!svn/vcc/default) at org.tmatesoft.svn.core.internal.wc.SVNErrorManager.error(SVNErrorManager.java:64) at org.tmatesoft.svn.core.internal.wc.SVNErrorManager.error(SVNErrorManager.java:51) at org.tmatesoft.svn.core.internal.io.dav.http.HTTPConnection._request(HTTPConnection.java:644) at org.tmatesoft.svn.core.internal.io.dav.http.HTTPConnection.request(HTTPConnection.java:285) ... 23 more Caused by: org.tmatesoft.svn.core.SVNErrorMessage: svn: REPORT request failed on '/svn/!svn/vcc/default' at org.tmatesoft.svn.core.SVNErrorMessage.create(SVNErrorMessage.java:200) at org.tmatesoft.svn.core.internal.io.dav.http.HTTPConnection._request(HTTPConnection.java:642) ... 24 more Caused by: org.tmatesoft.svn.core.SVNErrorMessage: svn: Processing REPORT request response failed: XML document structures must start and end within the same entity. (/svn/!svn/vcc/default) at org.tmatesoft.svn.core.SVNErrorMessage.create(SVNErrorMessage.java:200) at org.tmatesoft.svn.core.SVNErrorMessage.create(SVNErrorMessage.java:181) at org.tmatesoft.svn.core.SVNErrorMessage.create(SVNErrorMessage.java:133) at org.tmatesoft.svn.core.internal.io.dav.http.HTTPConnection.readData(HTTPConnection.java:767) at org.tmatesoft.svn.core.internal.io.dav.http.HTTPConnection.readData(HTTPConnection.java:719) at org.tmatesoft.svn.core.internal.io.dav.http.HTTPRequest.dispatch(HTTPRequest.java:216) at org.tmatesoft.svn.core.internal.io.dav.http.HTTPConnection._request(HTTPConnection.java:364) ... 24 more -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
