Author: mes
Date: 2011-10-11 14:53:23 -0700 (Tue, 11 Oct 2011)
New Revision: 27133
Modified:
csplugins/trunk/ucsd/mes/genomespace-webstart/pom.xml
csplugins/trunk/ucsd/mes/genomespace-webstart/src/main/jnlp/template.vm
Log:
updates to include new plugins
Modified: csplugins/trunk/ucsd/mes/genomespace-webstart/pom.xml
===================================================================
--- csplugins/trunk/ucsd/mes/genomespace-webstart/pom.xml 2011-10-11
21:51:08 UTC (rev 27132)
+++ csplugins/trunk/ucsd/mes/genomespace-webstart/pom.xml 2011-10-11
21:53:23 UTC (rev 27133)
@@ -96,5 +96,42 @@
<version>1.0-SNAPSHOT</version>
<classifier>jar-with-dependencies</classifier>
</dependency>
+ <dependency>
+ <groupId>cytoscape</groupId>
+ <artifactId>cytable-reader</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape</groupId>
+ <artifactId>gxp-reader</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ <classifier>jar-with-dependencies</classifier>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape-temp</groupId>
+ <artifactId>bingo</artifactId>
+ <version>2.44</version>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape-temp</groupId>
+ <artifactId>enhancedsearch</artifactId>
+ <version>1.2</version>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape-temp</groupId>
+ <artifactId>shortestpath</artifactId>
+ <version>1.1</version>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape-temp</groupId>
+ <artifactId>jactivemodules</artifactId>
+ <version>2.23</version>
+ </dependency>
+ <dependency>
+ <groupId>cytoscape-temp</groupId>
+ <artifactId>mcode</artifactId>
+ <version>1.32</version>
+ </dependency>
</dependencies>
</project>
Modified:
csplugins/trunk/ucsd/mes/genomespace-webstart/src/main/jnlp/template.vm
===================================================================
--- csplugins/trunk/ucsd/mes/genomespace-webstart/src/main/jnlp/template.vm
2011-10-11 21:51:08 UTC (rev 27132)
+++ csplugins/trunk/ucsd/mes/genomespace-webstart/src/main/jnlp/template.vm
2011-10-11 21:53:23 UTC (rev 27133)
@@ -12,6 +12,8 @@
$NETWORK=htmlspecialchars($_GET['network']);
$SESSION=htmlspecialchars($_GET['session']);
$GSENV=htmlspecialchars($_GET['gsenv']);
+ $NODETABLE=htmlspecialchars($_GET['nodeTable']);
+ $EDGETABLE=htmlspecialchars($_GET['edgeTable']);
print('<?xml version="1.0" encoding="utf-8"?>');
?>
<jnlp codebase="$project.Url">
@@ -51,6 +53,14 @@
print(" <argument>-N</argument>\n");
print(" <argument>$NETWORK</argument>\n");
}
+ if ($NODETABLE != null && $NODETABLE != "") {
+ print(" <argument>-P</argument>\n");
+ print(" <argument>node.cytable=$NODETABLE</argument>\n");
+ }
+ if ($EDGETABLE != null && $EDGETABLE != "") {
+ print(" <argument>-P</argument>\n");
+ print(" <argument>edge.cytable=$EDGETABLE</argument>\n");
+ }
}
# set the genomespace environment
@@ -98,9 +108,23 @@
<argument>-p</argument>
<argument>yfiles.YFilesLayoutPlugin</argument>
<argument>-p</argument>
+ <argument>cytoscape.gxp.GXPReaderPlugin</argument>
+ <argument>-p</argument>
+ <argument>cytoscape.cytable.CyTableReaderPlugin</argument>
+ <argument>-p</argument>
<argument>cytoscape.genomespace.libs.GenomeSpaceLibsPlugin</argument>
<argument>-p</argument>
<argument>cytoscape.genomespace.GenomeSpacePlugin</argument>
+ <argument>-p</argument>
+ <argument>csplugins.mcode.MCODEPlugin</argument>
+ <argument>-p</argument>
+ <argument>BiNGO.BiNGOplugin</argument>
+ <argument>-p</argument>
+ <argument>csplugins.enhanced.search.EnhancedSearchPlugin</argument>
+ <argument>-p</argument>
+ <argument>csplugins.jActiveModules.ActiveModulesUI</argument>
+ <argument>-p</argument>
+ <argument>csplugins.mrsva.shortestpath.ShortestPathPlugin</argument>
</application-desc>
</jnlp>
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