Author: jm
Date: 2011-10-14 11:37:59 -0700 (Fri, 14 Oct 2011)
New Revision: 27184

Added:
   csplugins/trunk/toronto/jm/cykaraf/distribution/
   csplugins/trunk/toronto/jm/cykaraf/distribution/pom.xml
   csplugins/trunk/toronto/jm/cykaraf/distribution/src/
   csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/
   csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/descriptors/
   
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/descriptors/unix-bin.xml
   csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/filtered-resources/
   
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/filtered-resources/etc/
   
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/filtered-resources/etc/org.apache.karaf.features.cfg
   
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/filtered-resources/etc/system.properties
   csplugins/trunk/toronto/jm/cykaraf/features/
   csplugins/trunk/toronto/jm/cykaraf/features/pom.xml
   csplugins/trunk/toronto/jm/cykaraf/features/src/
   csplugins/trunk/toronto/jm/cykaraf/features/src/main/
   csplugins/trunk/toronto/jm/cykaraf/features/src/main/resources/
   csplugins/trunk/toronto/jm/cykaraf/features/src/main/resources/features.xml
Log:
Added initial version of Karaf-based Cytoscape 3 launcher


Added: csplugins/trunk/toronto/jm/cykaraf/distribution/pom.xml
===================================================================
--- csplugins/trunk/toronto/jm/cykaraf/distribution/pom.xml                     
        (rev 0)
+++ csplugins/trunk/toronto/jm/cykaraf/distribution/pom.xml     2011-10-14 
18:37:59 UTC (rev 27184)
@@ -0,0 +1,133 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0"; 
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; 
xsi:schemaLocation="http://maven.apache.org/POM 
http://maven.apache.org/xsd/maven-4.0.0.xsd";>
+       <modelVersion>4.0.0</modelVersion>
+
+       <parent>
+               <groupId>org.cytoscape</groupId>
+               <artifactId>parent</artifactId>
+               <version>3.0.0-alpha9-SNAPSHOT</version>
+       </parent>
+       
+       <groupId>org.cytoscape</groupId>
+       <artifactId>cykaraf</artifactId>
+       <version>3.0.0-M4-SNAPSHOT</version>
+       <packaging>pom</packaging>
+       <name>Cytoscape Karaf Distribution</name>
+
+       <properties>
+               <karaf.version>2.2.3</karaf.version>
+       </properties>
+
+       <dependencies>
+               <dependency>
+                       <groupId>org.apache.karaf</groupId>
+                       <artifactId>apache-karaf</artifactId>
+                       <version>${karaf.version}</version>
+                       <type>tar.gz</type>
+               </dependency>
+               <dependency>
+                       <groupId>org.apache.karaf.assemblies.features</groupId>
+                       <artifactId>standard</artifactId>
+                       <version>${karaf.version}</version>
+                       <type>xml</type>
+                       <classifier>features</classifier>
+               </dependency>
+       </dependencies>
+
+       <build>
+               <resources>
+                       <resource>
+                               
<directory>src/main/filtered-resources</directory>
+                               <filtering>true</filtering>
+                               <includes>
+                                       <include>**/*</include>
+                               </includes>
+                       </resource>
+               </resources>
+               <plugins>
+                       <plugin>
+                               <groupId>org.apache.maven.plugins</groupId>
+                               <artifactId>maven-resources-plugin</artifactId>
+                               <version>2.5</version>
+                               <executions>
+                                       <execution>
+                                               <id>filter</id>
+                                               
<phase>generate-resources</phase>
+                                               <goals>
+                                                       <goal>resources</goal>
+                                               </goals>
+                                       </execution>
+                               </executions>
+                       </plugin>
+                       <plugin>
+                               <groupId>org.apache.karaf.tooling</groupId>
+                               <artifactId>features-maven-plugin</artifactId>
+                               <version>${karaf.version}</version>
+                               <executions>
+                                       <execution>
+                                       <id>add-features-to-repo</id>
+                                       <phase>generate-resources</phase>
+                                       <goals>
+                                               
<goal>add-features-to-repo</goal>
+                                       </goals>
+                                       <configuration>
+                                                       <descriptors>
+                                                               
<descriptor>mvn:org.apache.karaf.assemblies.features/standard/${karaf.version}/xml/features</descriptor>
+                                                               
<descriptor>mvn:org.cytoscape/features/${version}/xml/features</descriptor>
+                                                       </descriptors>
+                                                       <features>
+                                                               
<feature>cytoscape-gui</feature>
+                                                       </features>
+                                                       
<includeMvnBasedDescriptors>true</includeMvnBasedDescriptors>
+                                                       
<repository>target/features-repo</repository>
+                                       </configuration>
+                                       </execution>
+                               </executions>
+                       </plugin>
+                       <plugin>
+                               <groupId>org.apache.maven.plugins</groupId>
+                               <artifactId>maven-dependency-plugin</artifactId>
+                               <executions>
+                                       <execution>
+                                               <!-- Uncompress the standard 
Karaf distribution -->
+                                               <id>unpack</id>
+                                               
<phase>generate-resources</phase>
+                                               <goals>
+                                                       <goal>unpack</goal>
+                                               </goals>
+                                               <configuration>
+                                                       <artifactItems>
+                                                               <artifactItem>
+                                                                       
<groupId>org.apache.karaf</groupId>
+                                                                       
<artifactId>apache-karaf</artifactId>
+                                                                       
<type>tar.gz</type>
+                                                                       
<outputDirectory>target/dependencies</outputDirectory>
+                                                               </artifactItem>
+                                                       </artifactItems>
+                                               </configuration>
+                                       </execution>
+                               </executions>
+                       </plugin>
+                       <plugin>
+                               <groupId>org.apache.maven.plugins</groupId>
+                               <artifactId>maven-assembly-plugin</artifactId>
+                               <executions>
+                                       <execution>
+                                               <id>unix-bin</id>
+                                               <phase>package</phase>
+                                               <goals>
+                                                       <goal>single</goal>
+                                               </goals>
+                                               <configuration>
+                                                       <descriptors>
+                                                               
<descriptor>src/main/descriptors/unix-bin.xml</descriptor>
+                                                       </descriptors>
+                                                       
<finalName>${project.artifactId}-${project.version}</finalName>
+                                                       
<tarLongFileMode>gnu</tarLongFileMode>
+                                               </configuration>
+                                       </execution>
+                               </executions>
+                       </plugin>
+               </plugins>
+       </build>
+</project>

Added: 
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/descriptors/unix-bin.xml
===================================================================
--- 
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/descriptors/unix-bin.xml
                           (rev 0)
+++ 
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/descriptors/unix-bin.xml
   2011-10-14 18:37:59 UTC (rev 27184)
@@ -0,0 +1,93 @@
+<assembly>
+    <id></id>
+
+    <formats>
+        <format>tar.gz</format>
+    </formats>
+
+    <fileSets>
+        <!-- Expanded Karaf Standard Distribution -->
+        <fileSet>
+            
<directory>target/dependencies/apache-karaf-${karaf.version}</directory>
+            <outputDirectory>/</outputDirectory>
+            <excludes>
+                <exclude>**/demos/**</exclude>
+                <exclude>bin/**</exclude>
+                <exclude>etc/system.properties</exclude>
+                <exclude>etc/users.properties</exclude>
+                <exclude>etc/org.apache.karaf.features.cfg</exclude>
+                <exclude>etc/org.ops4j.pax.logging.cfg</exclude>
+                <exclude>LICENSE</exclude>
+                <exclude>NOTICE</exclude>
+                <exclude>README</exclude>
+                <exclude>RELEASE-NOTES</exclude>
+                <exclude>karaf-manual*.html</exclude>
+                <exclude>karaf-manual*.pdf</exclude>
+            </excludes>
+        </fileSet>
+
+        <!-- Copy over bin/* separately to get the correct file mode -->
+        <fileSet>
+            
<directory>target/dependencies/apache-karaf-${karaf.version}</directory>
+            <outputDirectory>/</outputDirectory>
+            <includes>
+                <include>bin/admin</include>
+                <include>bin/karaf</include>
+                <include>bin/start</include>
+                <include>bin/stop</include>
+            </includes>
+            <fileMode>0755</fileMode>
+        </fileSet>
+
+        <!-- Copy over jar files -->
+        <!--
+        <fileSet>
+            <directory>target/dependencies</directory>
+            <includes>
+                <include>my-custom.jar</include>
+            </includes>
+            <outputDirectory>/lib/</outputDirectory>
+        </fileSet>
+        -->
+
+        <fileSet>
+            <directory>src/main/distribution</directory>
+            <outputDirectory>/</outputDirectory>
+            <fileMode>0644</fileMode>
+        </fileSet>
+        <fileSet>
+            <directory>target/classes/etc</directory>
+            <outputDirectory>/etc/</outputDirectory>
+            <lineEnding>unix</lineEnding>
+            <fileMode>0644</fileMode>
+            <excludes>
+                <exclude>**/*.formatted</exclude>
+            </excludes>
+        </fileSet>
+
+        <fileSet>
+            <directory>target/features-repo</directory>
+            <outputDirectory>/system</outputDirectory>
+        </fileSet>
+
+    </fileSets>
+
+    <files>
+        <!--
+        <file>
+            
<source>/home/jbonofre/workspace/karaf/karaf-2.2.2/manual/target/dependencies/apache-karaf-2.2.2/bin/karaf</source>
+            <outputDirectory>/bin/</outputDirectory>
+            <destName>my-custom</destName>
+            <fileMode>0755</fileMode>
+            <lineEnding>unix</lineEnding>
+        </file>
+        <file>
+            
<source>/home/jbonofre/workspace/karaf/karaf-2.2.2/manual/target/classes/features.xml</source>
+            
<outputDirectory>/system/my.groupid/my-features/2.2.2</outputDirectory>
+            <destName>my-features-2.2.2-features.xml</destName>
+            <fileMode>0644</fileMode>
+            <lineEnding>unix</lineEnding>
+        </file>
+        -->
+    </files>
+</assembly>
\ No newline at end of file

Added: 
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/filtered-resources/etc/org.apache.karaf.features.cfg
===================================================================
--- 
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/filtered-resources/etc/org.apache.karaf.features.cfg
                               (rev 0)
+++ 
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/filtered-resources/etc/org.apache.karaf.features.cfg
       2011-10-14 18:37:59 UTC (rev 27184)
@@ -0,0 +1,2 @@
+featuresRepositories=mvn:org.apache.karaf.assemblies.features/standard/${karaf.version}/xml/features,mvn:org.apache.karaf.assemblies.features/enterprise/${karaf.version}/xml/features,mvn:org.cytoscape/features/${version}/xml/features
+featuresBoot=config,ssh,management,cytoscape-gui

Added: 
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/filtered-resources/etc/system.properties
===================================================================
--- 
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/filtered-resources/etc/system.properties
                           (rev 0)
+++ 
csplugins/trunk/toronto/jm/cykaraf/distribution/src/main/filtered-resources/etc/system.properties
   2011-10-14 18:37:59 UTC (rev 27184)
@@ -0,0 +1,4 @@
+karaf.name=Cytoscape ${version}
+karaf.default.repository=system
+
+org.ops4j.pax.logging.DefaultServiceLog.level=ERROR
\ No newline at end of file

Added: csplugins/trunk/toronto/jm/cykaraf/features/pom.xml
===================================================================
--- csplugins/trunk/toronto/jm/cykaraf/features/pom.xml                         
(rev 0)
+++ csplugins/trunk/toronto/jm/cykaraf/features/pom.xml 2011-10-14 18:37:59 UTC 
(rev 27184)
@@ -0,0 +1,66 @@
+<project xmlns="http://maven.apache.org/POM/4.0.0";
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 
http://maven.apache.org/maven-v4_0_0.xsd";>
+       <modelVersion>4.0.0</modelVersion>
+        
+       <groupId>org.cytoscape</groupId>
+       <artifactId>features</artifactId>
+       <packaging>pom</packaging>
+       <version>3.0.0-M4-SNAPSHOT</version>
+       <name>Cytoscape Feature Repository</name>
+       
+       <properties>
+               
<cytoscape.api.version>3.0.0-alpha8-SNAPSHOT</cytoscape.api.version>
+               
<cytoscape.impl.version>3.0.0-alpha8-SNAPSHOT</cytoscape.impl.version>
+               
<cytoscape.support.version>3.0.0-alpha7-SNAPSHOT</cytoscape.support.version>
+       </properties>
+       <build>
+               <plugins>
+                       <plugin>
+                               <artifactId>maven-resources-plugin</artifactId>
+                               <version>2.4.3</version>
+                               <executions>
+                                       <execution>
+                                               <id>copy-resources</id>
+                                               <phase>validate</phase>
+                                               <goals>
+                                                       
<goal>copy-resources</goal>
+                                               </goals>
+                                               <configuration>
+                                                       
<outputDirectory>${basedir}/target</outputDirectory>
+                                                       <resources>
+                                                               <resource>
+                                                                       
<directory>src/main/resources</directory>
+                                                                       
<filtering>true</filtering>
+                                                               </resource>
+                                                       </resources>
+                                               </configuration>
+                                       </execution>
+                               </executions>
+                       </plugin>
+                       <plugin>
+                               <groupId>org.codehaus.mojo</groupId>
+                               
<artifactId>build-helper-maven-plugin</artifactId>
+                               <version>1.7</version>
+                               <executions>
+                                       <execution>
+                                               <id>attach-artifacts</id>
+                                               <phase>package</phase>
+                                               <goals>
+                                                       
<goal>attach-artifact</goal>
+                                               </goals>
+                                               <configuration>
+                                                       <artifacts>
+                                                               <artifact>
+                                                                       
<file>target/features.xml</file>
+                                                                       
<type>xml</type>
+                                                                       
<classifier>features</classifier>
+                                                               </artifact>
+                                                       </artifacts>
+                                               </configuration>
+                                       </execution>
+                               </executions>
+                       </plugin>
+               </plugins>
+       </build>
+</project>

Added: 
csplugins/trunk/toronto/jm/cykaraf/features/src/main/resources/features.xml
===================================================================
--- csplugins/trunk/toronto/jm/cykaraf/features/src/main/resources/features.xml 
                        (rev 0)
+++ csplugins/trunk/toronto/jm/cykaraf/features/src/main/resources/features.xml 
2011-10-14 18:37:59 UTC (rev 27184)
@@ -0,0 +1,132 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<features>
+  <feature name="cytoscape-gui" version="${version}">
+  
+    <bundle start-level="1">mvn:org.slf4j/slf4j-api/1.5.8</bundle>
+    <bundle start-level="1">mvn:org.slf4j/slf4j-simple/1.5.8</bundle>
+    <bundle start-level="1">mvn:org.osgi/org.osgi.core/4.2.0</bundle>
+    
+    <bundle 
start-level="1">mvn:org.cytoscape/splash-updater-impl/${cytoscape.support.version}</bundle>
+    
+    <bundle 
start-level="10">mvn:org.cytoscape/equations-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/di-util-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/model-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/viewmodel-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/vizmap-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/vizmap-gui-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/work-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/work-swing-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/swing-application-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/event-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/plugin-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/dnd-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/io-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/session-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/core-task-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/layout-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/presentation-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/property-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/webservice-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="10">mvn:org.cytoscape/application-api/${cytoscape.api.version}</bundle>
+    
+    <bundle 
start-level="15">mvn:org.cytoscape/property-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="15">mvn:org.cytoscape/graph-render/3.0.0-alpha8-SNAPSHOT</bundle>
+    <bundle 
start-level="15">mvn:org.cytoscape/util-intr/3.0.0-alpha8-SNAPSHOT</bundle>
+    <bundle 
start-level="15">mvn:org.cytoscape/spacial/3.0.0-alpha8-SNAPSHOT</bundle>
+    
+    <bundle 
start-level="2">mvn:cytoscape-temp/l2fprod-common-sheet/7.3</bundle>
+    
+    <bundle 
start-level="20">mvn:org.cytoscape/equations-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="20">mvn:org.cytoscape/event-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="20">mvn:org.cytoscape/swing-util-api/${cytoscape.api.version}</bundle>
+    <bundle 
start-level="20">mvn:org.cytoscape/service-api/${cytoscape.api.version}</bundle>
+    
+    <bundle 
start-level="25">mvn:org.cytoscape/model-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="25">mvn:org.cytoscape/work-swing-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="25">mvn:org.cytoscape/presentation-impl/${cytoscape.impl.version}</bundle>
+    
+    <bundle 
start-level="3">mvn:com.lowagie.text/com.springsource.com.lowagie.text/2.0.8</bundle>
+    <bundle 
start-level="3">mvn:org.cytoscape.wrappers/org.swinglabs.swingx/1.6.1</bundle>
+    <bundle 
start-level="3">mvn:cytoscape-temp/l2fprod-common-shared/7.3</bundle>
+    <bundle 
start-level="3">mvn:cytoscape-temp/l2fprod-common-fontchooser/7.3</bundle>
+    <bundle start-level="3">wrap:mvn:net.sf.opencsv/opencsv/2.1</bundle>
+    <bundle start-level="3">mvn:cytoscape-sun/jhall/1.0</bundle>
+    <bundle 
start-level="3">mvn:org.apache.commons/com.springsource.org.apache.commons.collections/3.2.1</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/colt/1.2.0</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/prefuse/20071021</bundle>
+    <bundle 
start-level="3">mvn:org.cytoscape.wrappers/org.apache.lucene/3.0.2</bundle>
+    <bundle 
start-level="3">mvn:org.jdom/com.springsource.org.jdom/1.1.0</bundle>
+    <bundle 
start-level="3">mvn:org.cytoscape.wrappers/org.swinglabs.swing-layout/1.0.3</bundle>
+    <bundle 
start-level="3">mvn:cytoscape-temp/freehep-graphicsio/2.1.3</bundle>
+    <bundle 
start-level="3">mvn:cytoscape-temp/freehep-graphicsio-svg/2.1.3</bundle>
+    <bundle 
start-level="3">mvn:cytoscape-temp/freehep-graphics2d/2.1.3</bundle>
+    <bundle 
start-level="3">mvn:cytoscape-temp/freehep-graphicsio-ps/2.1.3</bundle>
+    <bundle 
start-level="3">mvn:cytoscape-temp/freehep-graphics-base/2.1.3</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/freehep-io/2.1</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/jfree-jfreechart/1.0.13</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/jfree-jcommon/1.0.15</bundle>
+    <bundle 
start-level="3">mvn:org.apache.xmlbeans/com.springsource.org.apache.xmlbeans/2.4.0</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/org.apache.poi-all/3.6</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/violinstrings/1.0.2</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/jsbml/0.8-b1</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/biojava/1.7.1</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/jigsaw/2.2.6</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/stax2-api/3.0.1</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/staxmate/2.0.0</bundle>
+    <bundle 
start-level="3">mvn:cytoscape-temp/woodstox-core-lgpl/4.0.5</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/xstream/1.3.1</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/paxtools-core/4.0.0b3</bundle>
+    <bundle 
start-level="3">mvn:cytoscape-temp/biopax-converter/4.0.0b3</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/commons-codec/1.3</bundle>
+    <bundle 
start-level="3">mvn:cytoscape-temp/collections-generic/4.01</bundle>
+    <bundle 
start-level="3">mvn:org.apache.commons/com.springsource.org.apache.commons.lang/2.4.0</bundle>
+    <bundle start-level="3">mvn:cytoscape-temp/commons-httpclient/3.1</bundle>
+    <bundle 
start-level="3">mvn:com.googlecode.guava-osgi/guava-osgi/9.0.0</bundle>
+    
+    <bundle 
start-level="30">mvn:org.cytoscape/layout-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="30">mvn:org.cytoscape/viewmodel-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="30">mvn:org.cytoscape/vizmap-impl/${cytoscape.impl.version}</bundle>
+    
+    <bundle 
start-level="35">mvn:org.cytoscape/application-impl/${cytoscape.impl.version}</bundle>
+    
+    <bundle 
start-level="40">mvn:org.cytoscape/session-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="40">mvn:org.cytoscape/ding-customgraphics-manager-impl/${cytoscape.impl.version}</bundle>
+    
+    <bundle 
start-level="45">mvn:org.cytoscape/ding-presentation-impl/${cytoscape.impl.version}</bundle>
+    
+    <bundle 
start-level="50">mvn:org.cytoscape/io-impl/${cytoscape.impl.version}</bundle>
+    
+    <bundle 
start-level="55">mvn:org.cytoscape/core-task-impl/${cytoscape.impl.version}</bundle>
+    
+    <bundle 
start-level="60">mvn:org.cytoscape/swing-application-impl/${cytoscape.impl.version}</bundle>
+    
+    <bundle 
start-level="65">mvn:org.cytoscape/biopax-impl/${cytoscape.impl.version}</bundle>
+    
+    <bundle 
start-level="70">mvn:org.cytoscape/search-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/table-browser-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/vizmap-gui-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/log-swing-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/manual-layout-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/layout-cytoscape-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/webservice-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/editor-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/layout-prefuse-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/linkout-impl/${cytoscape.impl.version}</bundle>
+    <!--
+    <bundle 
start-level="70">mvn:org.cytoscape/psi-mi-impl/${cytoscape.impl.version}</bundle>
+    -->
+    <bundle 
start-level="70">mvn:org.cytoscape/network-analyzer-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/table-import-impl/${cytoscape.impl.version}</bundle>
+    <!--
+    <bundle 
start-level="70">mvn:org.cytoscape/webservice-biomart-client-impl/${cytoscape.impl.version}</bundle>
+    -->
+    <bundle 
start-level="70">mvn:org.cytoscape/webservice-ncbi-client-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/filter-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/sbml-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/cpath2-impl/${cytoscape.impl.version}</bundle>
+    <bundle 
start-level="70">mvn:org.cytoscape/network-merge-impl/${cytoscape.impl.version}</bundle>
+    
+    <bundle 
start-level="75">mvn:org.cytoscape/plugin-impl/${cytoscape.impl.version}</bundle>
+
+  </feature>
+</features>

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