Author: pwang
Date: 2011-10-19 10:39:55 -0700 (Wed, 19 Oct 2011)
New Revision: 27232
Modified:
csplugins/trunk/ucsd/pwang/jActiveModules31/src/main/java/csplugins/jActiveModules/QuenchingSearchThread.java
Log:
Refactored to work with Cy3
Modified:
csplugins/trunk/ucsd/pwang/jActiveModules31/src/main/java/csplugins/jActiveModules/QuenchingSearchThread.java
===================================================================
---
csplugins/trunk/ucsd/pwang/jActiveModules31/src/main/java/csplugins/jActiveModules/QuenchingSearchThread.java
2011-10-19 17:00:57 UTC (rev 27231)
+++
csplugins/trunk/ucsd/pwang/jActiveModules31/src/main/java/csplugins/jActiveModules/QuenchingSearchThread.java
2011-10-19 17:39:55 UTC (rev 27232)
@@ -1,9 +1,6 @@
package csplugins.jActiveModules;
-//------------------------------------------------------------------------------
-
-import giny.model.GraphPerspective;
-import giny.model.Node;
-
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyNode;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
@@ -12,7 +9,7 @@
import csplugins.jActiveModules.data.ActivePathFinderParameters;
public class QuenchingSearchThread extends SearchThread{
- public QuenchingSearchThread(GraphPerspective graph, Vector resultPaths,
Node [] nodes, ActivePathFinderParameters apfParams, SortedVector oldPaths){
+ public QuenchingSearchThread(CyNetwork graph, Vector resultPaths, CyNode
[] nodes, ActivePathFinderParameters apfParams, SortedVector oldPaths){
super(graph,resultPaths,nodes,apfParams);
super.oldPaths = oldPaths;
HashSet temp = new HashSet();
@@ -63,7 +60,7 @@
while(quench){
//select a node
- Node current_node = nodes[count++];
+ CyNode current_node = nodes[count++];
toggleNode(current_node);
Vector newComps = updatePaths(current_node);
--
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