Author: pwang
Date: 2011-11-01 17:19:17 -0700 (Tue, 01 Nov 2011)
New Revision: 27371
Added:
csplugins/trunk/ucsd/ruschein/PanGIA-impl/src/main/java/org/idekerlab/PanGIAPlugin/DynamicSupport.java
Log:
Original creation
Added:
csplugins/trunk/ucsd/ruschein/PanGIA-impl/src/main/java/org/idekerlab/PanGIAPlugin/DynamicSupport.java
===================================================================
---
csplugins/trunk/ucsd/ruschein/PanGIA-impl/src/main/java/org/idekerlab/PanGIAPlugin/DynamicSupport.java
(rev 0)
+++
csplugins/trunk/ucsd/ruschein/PanGIA-impl/src/main/java/org/idekerlab/PanGIAPlugin/DynamicSupport.java
2011-11-02 00:19:17 UTC (rev 27371)
@@ -0,0 +1,104 @@
+package org.idekerlab.PanGIAPlugin;
+
+import java.util.ArrayList;
+import java.util.Collections;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
+import org.cytoscape.model.CyColumn;
+import org.cytoscape.model.CyRow;
+import org.cytoscape.model.CyTableEntry;
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.Tunable;
+import org.cytoscape.work.util.ListSingleSelection;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyNode;
+import org.cytoscape.view.model.CyNetworkView;
+import org.cytoscape.view.model.View;
+
+public class DynamicSupport {
+
+ private static final Logger logger =
LoggerFactory.getLogger(DynamicSupport.class);
+
+ private static final String nodeAttriName = "Module Overview Network";
+
+ public static String createDetailedView = "createDetailedView";
+ public static String saveModules = "saveModules";
+ public static String saveOverviewNetwork = "saveOverviewNetwork";
+ public static String saveNodesToMatrix = "saveNodesToMatrix";
+
+ private ListSingleSelection<String> menuTitleSelection;
+
+ @Tunable(description="List of configurable URLs")
+ public ListSingleSelection<String> getSubmenuOptions() {
+ return menuTitleSelection;
+ }
+
+ /**
+ * This method is a no-op. Don't use it.
+ */
+ public void setSubmenuOptions(ListSingleSelection<String> opts) {
+ // no-op
+ }
+
+ private Map<String,String> menuTitleActionMap = new
HashMap<String,String>();
+ private CyTableEntry[] tableEntries;
+
+ private CyNetworkView netView;
+ private View<CyNode> nodeView;
+ private String action = null;
+
+ public DynamicSupport() {
+ }
+
+
+ protected synchronized void setViews(View<CyNode> nodeView,
CyNetworkView netView){
+ menuTitleActionMap.clear();
+
+// boolean isOverviewNetwork =
PanGIAPlugin.output.containsKey(nodeView.getModel().getCyRow().get("name",
String.class));
+// if (!isOverviewNetwork){
+// return;
+// }
+//
+// if ( nodeView.getModel().getCyRow().get(nodeAttriName,
String.class) == null ) {
+// menuTitleSelection = null;
+// menuTitleActionMap.clear();
+// return;
+// }
+
+
+ System.out.println("DynamicSupport...........AAAA");
+
+ // determine the actions
+ menuTitleActionMap.put("Create Detailed View",
createDetailedView);
+
+ // boolean selectedHasNested = false;
+ // if (nodeView.getModel().getNetwork() != null){
+ menuTitleActionMap.put("Export Modules to Tab-Delimited
File", saveModules);
+ //}
+
+ //menuTitleActionMap.put("Save Selected Nodes to Matrix File",
xxx);
+
+ List<String> menuTitles = new ArrayList<String>(
menuTitleActionMap.keySet() );
+
+ System.out.println("menuTitles.toString() ="+
menuTitles.toString());
+
+ Collections.sort(menuTitles);
+ menuTitleSelection = new
ListSingleSelection<String>(menuTitles);
+ }
+
+
+
+ public TaskIterator getTaskIterator() {
+ String url = "none found";
+ synchronized (this) {
+ //System.out.println("Selected menu: " +
menuTitleSelection.getSelectedValue());
+ url = menuTitleActionMap.get(
menuTitleSelection.getSelectedValue() );
+ }
+ //System.out.println("url for LinkoutTask: " + url);
+ return new TaskIterator(new PanGIANodeViewTask(this.netView,
this.nodeView, action));
+ }
+}
\ No newline at end of file
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