Author: pwang
Date: 2011-11-08 16:05:59 -0800 (Tue, 08 Nov 2011)
New Revision: 27435
Modified:
csplugins/trunk/ucsd/pwang/jActiveModules-impl/src/main/java/csplugins/jActiveModules/ActivePaths.java
Log:
change the scope of a variable
Modified:
csplugins/trunk/ucsd/pwang/jActiveModules-impl/src/main/java/csplugins/jActiveModules/ActivePaths.java
===================================================================
---
csplugins/trunk/ucsd/pwang/jActiveModules-impl/src/main/java/csplugins/jActiveModules/ActivePaths.java
2011-11-09 00:02:50 UTC (rev 27434)
+++
csplugins/trunk/ucsd/pwang/jActiveModules-impl/src/main/java/csplugins/jActiveModules/ActivePaths.java
2011-11-09 00:05:59 UTC (rev 27435)
@@ -80,7 +80,6 @@
protected JMenu expressionConditionsMenu;
protected String currentCondition = "none";
protected Component[] activePaths;
- private Vector<Component> activePathsVect= new Vector<Component>();
protected String[] attrNames;
protected static boolean activePathsFindingIsAvailable;
@@ -191,20 +190,17 @@
}
public void run(TaskMonitor taskMonitor) {
-
-// System.out.println("\nEntering ActivePaths.run()....");
-//
-//
System.out.println("\napfParams.toString()=\n"+apfParams.toString()+"\n");
-
System.gc();
//long start = System.currentTimeMillis();
HashMap expressionMap = generateExpressionMap();
+ Vector<Component> activePathsVect= new Vector<Component>();
+
// run the path finding algorithm
final ActivePathsFinder apf =
new ActivePathsFinder(expressionMap, attrNames,
cyNetwork, apfParams,
- randomize ? null : mainFrame,
parentUI, this.activePathsVect);
+ randomize ? null : mainFrame,
parentUI, activePathsVect);
//activePaths = apf.findActivePaths();
@@ -214,7 +210,7 @@
activePaths = new Component[activePathsVect.size()];
for (int i=0; i< activePathsVect.size(); i++){
activePaths[i] = activePathsVect.get(i);
- }
+ }
// create nested networks
//1 . create subnetwork for each path
--
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