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Generating <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/apidocs/overview-tree.html...> Generating <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/apidocs/index-all.html...> Generating <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/apidocs/allclasses-frame.html...> Generating <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/apidocs/allclasses-noframe.html...> Generating <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/apidocs/index.html...> Generating <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/apidocs/overview-summary.html...> Generating <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/apidocs/help-doc.html...> Generating <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/apidocs/stylesheet.css...> 26 warnings [WARNING] Javadoc Warnings [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:39: package javax.help does not exist [WARNING] import javax.help.HelpBroker; [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:40: package javax.help does not exist [WARNING] import javax.help.HelpSet; [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:54: cannot find symbol [WARNING] symbol : class HelpBroker [WARNING] location: interface org.cytoscape.application.swing.CyHelpBroker [WARNING] public HelpBroker getHelpBroker(); [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:60: cannot find symbol [WARNING] symbol : class HelpSet [WARNING] location: interface org.cytoscape.application.swing.CyHelpBroker [WARNING] public HelpSet getHelpSet(); [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:9: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.BundleContext; [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:10: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.BundleActivator; [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:11: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.ServiceRegistration; [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:12: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.ServiceReference; [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:27: cannot find symbol [WARNING] symbol: class BundleActivator [WARNING] public abstract class AbstractCyActivator implements BundleActivator { [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:31: cannot find symbol [WARNING] symbol : class ServiceRegistration [WARNING] location: class org.cytoscape.service.util.AbstractCyActivator [WARNING] private final Map<Class,Map<Object,ServiceRegistration>> serviceRegistrations; [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:33: cannot find symbol [WARNING] symbol : class ServiceReference [WARNING] location: class org.cytoscape.service.util.AbstractCyActivator [WARNING] private final List<ServiceReference> gottenServices; [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:52: cannot find symbol [WARNING] symbol : class BundleContext [WARNING] location: class org.cytoscape.service.util.AbstractCyActivator [WARNING] public final void stop(BundleContext bc) { [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:81: cannot find symbol [WARNING] symbol : class BundleContext [WARNING] location: class org.cytoscape.service.util.AbstractCyActivator [WARNING] protected final <S> S getService(BundleContext bc, Class<S> serviceClass) { [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:106: cannot find symbol [WARNING] symbol : class BundleContext [WARNING] location: class org.cytoscape.service.util.AbstractCyActivator [WARNING] protected final <S> S getService(BundleContext bc, Class<S> serviceClass, String filter) { [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:133: cannot find symbol [WARNING] symbol : class BundleContext [WARNING] location: class org.cytoscape.service.util.AbstractCyActivator [WARNING] protected final void registerServiceListener(final BundleContext bc, final Object listener, final String registerMethodName, final String unregisterMethodName, final Class<?> serviceClass, final Class<?> methodClass, final String additionalFilter) { [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:153: cannot find symbol [WARNING] symbol : class BundleContext [WARNING] location: class org.cytoscape.service.util.AbstractCyActivator [WARNING] protected final void registerServiceListener(final BundleContext bc, final Object listener, final String registerMethodName, final String unregisterMethodName, final Class<?> serviceClass) { [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:168: cannot find symbol [WARNING] symbol : class BundleContext [WARNING] location: class org.cytoscape.service.util.AbstractCyActivator [WARNING] protected final void registerServiceListener(final BundleContext bc, final Object listener, final String registerMethodName, final String unregisterMethodName, final Class<?> serviceClass, final String additionalFilter) { [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:185: cannot find symbol [WARNING] symbol : class BundleContext [WARNING] location: class org.cytoscape.service.util.AbstractCyActivator [WARNING] protected final void registerServiceListener(final BundleContext bc, final Object listener, final String registerMethodName, final String unregisterMethodName, final Class<?> serviceClass, final Class<?> methodClass) { [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:196: cannot find symbol [WARNING] symbol : class BundleContext [WARNING] location: class org.cytoscape.service.util.AbstractCyActivator [WARNING] protected final void registerAllServices(final BundleContext bc, final Object service, final Properties props) { [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/service-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/service/util/AbstractCyActivator.java>:211: cannot find symbol [WARNING] symbol : class BundleContext [WARNING] location: class org.cytoscape.service.util.AbstractCyActivator [WARNING] protected final void registerService(final BundleContext bc, final Object service, final Class<?> serviceClass, final Properties props) { [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/work-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/TunableRecorder.java>:23: warning - @param argument "obj" is not a parameter name. [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/work-swing-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/swing/DialogTaskManager.java>:26: warning - Tag @link: reference not found: Tunable [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/work-swing-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/swing/DialogTaskManager.java>:26: warning - Tag @link: reference not found: Tunable [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/equations-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/equations/FunctionError.java>:36: warning - @CyAPI.Final.class is an unknown tag. [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/work-swing-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/swing/DialogTaskManager.java>:26: warning - Tag @link: reference not found: Tunable [WARNING] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/distro-javadoc-sources/work-swing-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/swing/DialogTaskManager.java>:26: warning - Tag @link: reference not found: Tunable [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT-javadoc.jar> ignoring exception during new ExecutedMojo null [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (attach-sources) @ plugin-api --- [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT-sources.jar> [INFO] [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ plugin-api --- [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT.jar [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/pom.xml> to /opt/tomcat-home/.m2/repository/org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT.pom [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT-jar-with-dependencies.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT-jar-with-dependencies.jar [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT-tests.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT-tests.jar [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT-javadoc.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT-javadoc.jar [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT-sources.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-bundle-plugin:2.3.4:install (default-install) @ plugin-api --- [INFO] Installing org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT.jar [INFO] Installing org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT-jar-with-dependencies.jar [INFO] Writing OBR metadata [INFO] Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ plugin-api --- Downloaded: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (2 KB at 37.7 KB/sec) Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-20111109.170527-91.jar Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-20111109.170527-91.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Javadoc/modules/org.cytoscape$plugin-api/builds/2011-11-09_12-04-27/archive/org.cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Javadoc/modules/org.cytoscape$plugin-api/builds/2011-11-09_12-04-27/archive/org.cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT-jar-with-dependencies.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Javadoc/modules/org.cytoscape$plugin-api/builds/2011-11-09_12-04-27/archive/org.cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT-jar-with-dependencies.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT-tests.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Javadoc/modules/org.cytoscape$plugin-api/builds/2011-11-09_12-04-27/archive/org.cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT-tests.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT-javadoc.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Javadoc/modules/org.cytoscape$plugin-api/builds/2011-11-09_12-04-27/archive/org.cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT-javadoc.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Javadoc/org.cytoscape$plugin-api/ws/target/plugin-api-3.0.0-alpha8-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Javadoc/modules/org.cytoscape$plugin-api/builds/2011-11-09_12-04-27/archive/org.cytoscape/plugin-api/3.0.0-alpha8-SNAPSHOT/plugin-api-3.0.0-alpha8-SNAPSHOT-sources.jar -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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