Author: clopes
Date: 2011-12-02 15:59:40 -0800 (Fri, 02 Dec 2011)
New Revision: 27683
Modified:
core3/api/trunk/session-api/src/main/java/org/cytoscape/session/CySession.java
Log:
Add getNetworks() method to CySession, so networks without network views can be
saved in the session file.
Modified:
core3/api/trunk/session-api/src/main/java/org/cytoscape/session/CySession.java
===================================================================
---
core3/api/trunk/session-api/src/main/java/org/cytoscape/session/CySession.java
2011-12-02 22:59:23 UTC (rev 27682)
+++
core3/api/trunk/session-api/src/main/java/org/cytoscape/session/CySession.java
2011-12-02 23:59:40 UTC (rev 27683)
@@ -36,6 +36,7 @@
import java.util.Properties;
import java.util.Set;
+import org.cytoscape.model.CyNetwork;
import org.cytoscape.model.CyTableMetadata;
import org.cytoscape.property.bookmark.Bookmarks;
import org.cytoscape.property.session.Cysession;
@@ -66,6 +67,7 @@
*/
public final class CySession {
+ private final Set<CyNetwork> networks;
private final Set<CyNetworkView> netViews;
private final Set<CyTableMetadata> tables;
private final Map<CyNetworkView,String> vsMap;
@@ -80,6 +82,11 @@
private CySession(Builder b) {
// TODO consider making defensive copies of objects...
+ if ( b.networks == null )
+ networks = new HashSet<CyNetwork>();
+ else
+ networks = b.networks;
+
if ( b.netViews == null )
netViews = new HashSet<CyNetworkView>();
else
@@ -128,6 +135,7 @@
*/
public static class Builder {
+ private Set<CyNetwork> networks;
private Set<CyNetworkView> netViews;
private Set<CyTableMetadata> tables;
private Map<CyNetworkView,String> vsMap;
@@ -146,8 +154,21 @@
/**
* Returns an instance of Builder that has at least been
configured
+ * with the specified networks.
+ * @param views A Set of CyNetwork objects, presumably all
networks
+ * that exist in this instance of Cytoscape.
+ * @return An instance of Builder that has at least been
configured
+ * with the specified networks.
+ */
+ public Builder networks(final Set<CyNetwork> networks) {
+ this.networks = networks;
+ return this;
+ }
+
+ /**
+ * Returns an instance of Builder that has at least been
configured
* with the specified network views.
- * @param views A Set of CyNetworkView objects, presumably all
networks
+ * @param views A Set of CyNetworkView objects, presumably all
network views
* that exist in this instance of Cytoscape.
* @return An instance of Builder that has at least been
configured
* with the specified network views.
@@ -250,6 +271,12 @@
}
/**
+ * Returns a set of all CyNetwork objects contained in this Session.
+ * @return A set of all CyNetwork objects contained in this Session.
+ */
+ public Set<CyNetwork> getNetworks() { return networks; }
+
+ /**
* Returns a set of all CyNetworkView objects contained in this
Session.
* @return A set of all CyNetworkView objects contained in this
Session.
*/
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