Author: clopes
Date: 2011-12-02 16:30:53 -0800 (Fri, 02 Dec 2011)
New Revision: 27689
Modified:
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXTaskFactory.java
Log:
Implemented changes in the CyNetworkViewWriterFactory interface.
Modified:
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXTaskFactory.java
===================================================================
---
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXTaskFactory.java
2011-12-03 00:27:30 UTC (rev 27688)
+++
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXTaskFactory.java
2011-12-03 00:30:53 UTC (rev 27689)
@@ -5,6 +5,7 @@
import org.cytoscape.io.CyFileFilter;
import org.cytoscape.io.write.CyNetworkViewWriterFactory;
import org.cytoscape.io.write.CyWriter;
+import org.cytoscape.model.CyNetwork;
import org.cytoscape.view.model.CyNetworkView;
import org.cytoscape.work.TaskFactory;
import org.cytoscape.work.TaskIterator;
@@ -12,7 +13,7 @@
public class ExportAsBioPAXTaskFactory implements CyNetworkViewWriterFactory,
TaskFactory {
private final CyFileFilter filter;
- private CyNetworkView view;
+ private CyNetwork network;
private OutputStream outputStream;
private final String fileName;
@@ -23,7 +24,7 @@
@Override
public CyWriter getWriterTask() {
- return new ExportAsBioPAXTask(fileName, outputStream,
view.getModel());
+ return new ExportAsBioPAXTask(fileName, outputStream, network);
}
@Override
@@ -40,10 +41,15 @@
public CyFileFilter getCyFileFilter() {
return filter;
}
+
+ @Override
+ public void setNetwork(CyNetwork network) {
+ this.network = network;
+ }
@Override
public void setNetworkView(CyNetworkView view) {
- this.view = view;
+ this.network = view.getModel();
}
}
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