See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/172/changes>
Changes: [mes] Various class and method name changes to be more clear and consistent. ------------------------------------------ [...truncated 4131 lines...] [INFO] [INFO] --- maven-bundle-plugin:2.3.4:install (default-install) @ biopax-impl --- [INFO] Installing org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/biopax-impl-3.0.0-alpha8-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ biopax-impl --- Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (1 KB at 10.8 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/biopax-impl-3.0.0-alpha8-20111212.202644-307.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/biopax-impl-3.0.0-alpha8-20111212.202644-307.jar (179 KB at 939.6 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/biopax-impl-3.0.0-alpha8-20111212.202644-307.pom Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/biopax-impl-3.0.0-alpha8-20111212.202644-307.pom (3 KB at 38.5 KB/sec) Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/maven-metadata.xml Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/maven-metadata.xml (470 B at 8.2 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (1 KB at 12.3 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/maven-metadata.xml (470 B at 9.4 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/biopax-impl-3.0.0-alpha8-20111212.202644-307-sources.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/biopax-impl-3.0.0-alpha8-20111212.202644-307-sources.jar (151 KB at 1215.0 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (1 KB at 18.9 KB/sec) [INFO] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [INFO] --- maven-bundle-plugin:2.3.4:deploy (default-deploy) @ biopax-impl --- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$biopax-impl/builds/2011-12-12_15-26-20/archive/org.cytoscape/biopax-impl/3.0.0-alpha8-SNAPSHOT/biopax-impl-3.0.0-alpha8-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/target/biopax-impl-3.0.0-alpha8-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$biopax-impl/builds/2011-12-12_15-26-20/archive/org.cytoscape/biopax-impl/3.0.0-alpha8-20111212.202644-307/biopax-impl-3.0.0-alpha8-20111212.202644-307.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/target/biopax-impl-3.0.0-alpha8-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$biopax-impl/builds/2011-12-12_15-26-20/archive/org.cytoscape/biopax-impl/3.0.0-alpha8-20111212.202644-307/biopax-impl-3.0.0-alpha8-20111212.202644-307-sources.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Command Executor 3.0.0-alpha8-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ command-executor-impl --- [INFO] [INFO] Compiling 14 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/command-executor-impl/target/classes> [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ command-executor-impl --- [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/command-executor-impl/src/test/resources> [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ command-executor-impl --- [INFO] [INFO] No sources to compile [INFO] --- maven-compiler-plugin:2.3.2:testCompile (default-testCompile) @ command-executor-impl --- [INFO] [INFO] No tests to run. [INFO] Surefire report directory: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/command-executor-impl/target/surefire-reports> [INFO] --- maven-surefire-plugin:2.10:test (default-test) @ command-executor-impl --- ------------------------------------------------------- T E S T S ------------------------------------------------------- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] --- maven-bundle-plugin:2.3.4:bundle (default-bundle) @ command-executor-impl --- ignoring exception during new ExecutedMojo null [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (attach-sources) @ command-executor-impl --- [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/command-executor-impl/target/command-executor-impl-3.0.0-alpha8-SNAPSHOT-sources.jar> [INFO] [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/command-executor-impl/target/command-executor-impl-3.0.0-alpha8-SNAPSHOT.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/command-executor-impl-3.0.0-alpha8-SNAPSHOT.jar [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/command-executor-impl/pom.xml> to /opt/tomcat-home/.m2/repository/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/command-executor-impl-3.0.0-alpha8-SNAPSHOT.pom [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ command-executor-impl --- [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/command-executor-impl/target/command-executor-impl-3.0.0-alpha8-SNAPSHOT-sources.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/command-executor-impl-3.0.0-alpha8-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-bundle-plugin:2.3.4:install (default-install) @ command-executor-impl --- [INFO] Installing org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/command-executor-impl-3.0.0-alpha8-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ command-executor-impl --- Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (2 KB at 12.6 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/command-executor-impl-3.0.0-alpha8-20111212.202648-307.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/command-executor-impl-3.0.0-alpha8-20111212.202648-307.jar (21 KB at 206.2 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/command-executor-impl-3.0.0-alpha8-20111212.202648-307.pom Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/command-executor-impl-3.0.0-alpha8-20111212.202648-307.pom (3 KB at 35.6 KB/sec) Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/maven-metadata.xml Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/maven-metadata.xml (395 B at 5.3 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (2 KB at 19.1 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/maven-metadata.xml (395 B at 4.1 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/command-executor-impl-3.0.0-alpha8-20111212.202648-307-sources.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/command-executor-impl-3.0.0-alpha8-20111212.202648-307-sources.jar (13 KB at 145.9 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (2 KB at 8.8 KB/sec) [INFO] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [INFO] --- maven-bundle-plugin:2.3.4:deploy (default-deploy) @ command-executor-impl --- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/command-executor-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$command-executor-impl/builds/2011-12-12_15-26-20/archive/org.cytoscape/command-executor-impl/3.0.0-alpha8-SNAPSHOT/command-executor-impl-3.0.0-alpha8-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/command-executor-impl/target/command-executor-impl-3.0.0-alpha8-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$command-executor-impl/builds/2011-12-12_15-26-20/archive/org.cytoscape/command-executor-impl/3.0.0-alpha8-20111212.202648-307/command-executor-impl-3.0.0-alpha8-20111212.202648-307.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/command-executor-impl/target/command-executor-impl-3.0.0-alpha8-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$command-executor-impl/builds/2011-12-12_15-26-20/archive/org.cytoscape/command-executor-impl/3.0.0-alpha8-20111212.202648-307/command-executor-impl-3.0.0-alpha8-20111212.202648-307-sources.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.equations-impl 3.0.0-alpha8-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] skip non existing resourceDirectory <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/equations-impl/src/integration/resources> [INFO] Copying 0 resource [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ equations-impl --- [INFO] [INFO] Compiling 78 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/equations-impl/target/classes> [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ equations-impl --- [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/equations-impl/src/main/java/org/cytoscape/equations/internal/EquationParserImpl.java>:[321,21] cannot find symbol symbol : method isTypeOfList(java.lang.Class<capture#358 of ?>) location: class org.cytoscape.equations.FunctionUtil [INFO] 1 error [INFO] ------------------------------------------------------------- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/equations-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$equations-impl/builds/2011-12-12_15-26-20/archive/org.cytoscape/equations-impl/3.0.0-alpha8-SNAPSHOT/equations-impl-3.0.0-alpha8-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [5.096s] [INFO] org.cytoscape.biopax-impl [org.cytoscape.biopax] .. SUCCESS [8.443s] [INFO] Command Executor .................................. SUCCESS [3.409s] [INFO] org.cytoscape.equations-impl ...................... FAILURE [1.518s] [INFO] model-impl-parent ................................. SKIPPED [INFO] org.cytoscape.model-impl .......................... SKIPPED [INFO] viewmodel-impl-parent ............................. SKIPPED [INFO] org.cytoscape.viewmodel-impl ...................... SKIPPED [INFO] Ding Implementation Parent Pom .................... SKIPPED [INFO] org.cytoscape.util-intr ........................... SKIPPED [INFO] org.cytoscape.spacial ............................. SKIPPED [INFO] org.cytoscape.graph-render ........................ SKIPPED [INFO] org.cytoscape.ding-presentation-impl .............. SKIPPED [INFO] org.cytoscape.core-task-impl ...................... SKIPPED [INFO] org.cytoscape.cpath2-impl [org.cytoscape.cpath2] .. SKIPPED [INFO] org.cytoscape.ding-customgraphics-manager-impl .... SKIPPED [INFO] io-impl-parent .................................... SKIPPED [INFO] org.cytoscape.io-impl [org.cytoscape.io.internal] . SKIPPED [INFO] event-impl-parent ................................. SKIPPED [INFO] org.cytoscape.event-impl .......................... SKIPPED [INFO] org.cytoscape.layout-impl ......................... SKIPPED [INFO] org.cytoscape.ding-impl-performance-debug ......... SKIPPED [INFO] org.cytoscape.editor-impl ......................... SKIPPED [INFO] org.cytoscape.equations-functions-impl ............ SKIPPED [INFO] org.cytoscape.event-impl-it ....................... SKIPPED [INFO] org.cytoscape.filter-impl [org.cytoscape.filter.internal] SKIPPED [INFO] GraphML Reader and Writer for Cytoscape 3 ......... SKIPPED [INFO] org.cytoscape.io-impl-performance ................. SKIPPED [INFO] org.cytoscape.layout-cytoscape-impl [csapps.layout] SKIPPED [INFO] org.cytoscape.layout-jgraph-impl [csapps.layout] .. SKIPPED [INFO] org.cytoscape.layout-prefuse-impl [org.cytoscape.prefuse.layouts.internal] SKIPPED [INFO] org.cytoscape.linkout-impl [org.cytoscape.linkout.internal] SKIPPED [INFO] org.cytoscape.log-swing-impl [org.cytoscape.log.internal] SKIPPED [INFO] Manual Layout ..................................... SKIPPED [INFO] NetworkAnalyzer ................................... SKIPPED [INFO] Advanced Network Merge ............................ SKIPPED [INFO] org.cytoscape.app-impl ............................ SKIPPED [INFO] org.cytoscape.presentation-impl [org.cytoscape.view.presentation.internal] SKIPPED [INFO] org.cytoscape.property.internal ................... SKIPPED [INFO] org.cytoscape.psi-mi-impl [org.cytoscape.psi_mi.internal] SKIPPED [INFO] org.cytoscape.sbml-impl [org.cytoscape.sbml.internal] SKIPPED [INFO] org.cytoscape.search-impl [org.cytoscape.search.internal] SKIPPED [INFO] org.cytoscape.session-impl ........................ SKIPPED [INFO] Cytoscape Swing Application Impl .................. SKIPPED [INFO] Cytoscape Table Browser Implementation ............ SKIPPED [INFO] org.cytoscape.table-import-impl [org.cytoscape.tableimport.internal] SKIPPED [INFO] org.cytoscape.vizmap-gui-impl ..................... SKIPPED [INFO] vizmap-impl-parent ................................ SKIPPED [INFO] org.cytoscape.view.vizmap-impl .................... SKIPPED [INFO] org.cytoscape.io.webservice-biomart-client-impl [org.cytoscape.io.webservice.biomart] SKIPPED [INFO] org.cytoscape.webservice-impl [org.cytoscape.webservice.internal] SKIPPED [INFO] org.cytoscape.webservice-ncbi-client-impl [org.cytoscape.webservice.ncbi] SKIPPED [INFO] work-swing-impl-parent ............................ SKIPPED [INFO] org.cytoscape.work-swing-impl ..................... SKIPPED [INFO] org.cytoscape.application-impl .................... SKIPPED [INFO] org.cytoscape.webservice-psicquic-client-impl [org.cytoscape.webservice.psicquic] SKIPPED [INFO] datasource-impl ................................... SKIPPED [INFO] datasource-biogrid-impl ........................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 22.768s [INFO] Finished at: Mon Dec 12 15:26:51 GMT-05:00 2011 [INFO] Final Memory: 27M/65M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:compile (default-compile) on project equations-impl: Compilation failure <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/equations-impl/src/main/java/org/cytoscape/equations/internal/EquationParserImpl.java>:[321,21] cannot find symbol symbol : method isTypeOfList(java.lang.Class<capture#358 of ?>) location: class org.cytoscape.equations.FunctionUtil cause : Compilation failure <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/equations-impl/src/main/java/org/cytoscape/equations/internal/EquationParserImpl.java>:[321,21] cannot find symbol symbol : method isTypeOfList(java.lang.Class<capture#358 of ?>) location: class org.cytoscape.equations.FunctionUtil Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:compile (default-compile) on project equations-impl: Compilation failure <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/equations-impl/src/main/java/org/cytoscape/equations/internal/EquationParserImpl.java>:[321,21] cannot find symbol symbol : method isTypeOfList(java.lang.Class<capture#358 of ?>) location: class org.cytoscape.equations.FunctionUtil at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:616) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) at java.util.concurrent.FutureTask.run(FutureTask.java:166) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) at java.lang.Thread.run(Thread.java:636) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/equations-impl/src/main/java/org/cytoscape/equations/internal/EquationParserImpl.java>:[321,21] cannot find symbol symbol : method isTypeOfList(java.lang.Class<capture#358 of ?>) location: class org.cytoscape.equations.FunctionUtil at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:656) at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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