See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/233/changes>
Changes: [mes] added support for reading props from the config dir at startup ------------------------------------------ [...truncated 9311 lines...] [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (attach-sources) @ layout-jgraph-impl --- [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-jgraph-impl/target/layout-jgraph-impl-3.0.0-alpha8-SNAPSHOT-sources.jar> [INFO] [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-jgraph-impl/target/layout-jgraph-impl-3.0.0-alpha8-SNAPSHOT.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/layout-jgraph-impl-3.0.0-alpha8-SNAPSHOT.jar [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-jgraph-impl/pom.xml> to /opt/tomcat-home/.m2/repository/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/layout-jgraph-impl-3.0.0-alpha8-SNAPSHOT.pom [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ layout-jgraph-impl --- [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-jgraph-impl/target/layout-jgraph-impl-3.0.0-alpha8-SNAPSHOT-sources.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/layout-jgraph-impl-3.0.0-alpha8-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-bundle-plugin:2.3.4:install (default-install) @ layout-jgraph-impl --- [INFO] Installing org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/layout-jgraph-impl-3.0.0-alpha8-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ layout-jgraph-impl --- Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (2 KB at 9.5 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/layout-jgraph-impl-3.0.0-alpha8-20111224.014506-343.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/layout-jgraph-impl-3.0.0-alpha8-20111224.014506-343.jar (11 KB at 209.5 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/layout-jgraph-impl-3.0.0-alpha8-20111224.014506-343.pom Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/layout-jgraph-impl-3.0.0-alpha8-20111224.014506-343.pom (3 KB at 36.0 KB/sec) Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/maven-metadata.xml Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/maven-metadata.xml (417 B at 17.0 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (2 KB at 18.0 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/maven-metadata.xml (417 B at 8.5 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/layout-jgraph-impl-3.0.0-alpha8-20111224.014506-343-sources.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/layout-jgraph-impl-3.0.0-alpha8-20111224.014506-343-sources.jar (6 KB at 100.6 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (2 KB at 16.2 KB/sec) [INFO] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [INFO] --- maven-bundle-plugin:2.3.4:deploy (default-deploy) @ layout-jgraph-impl --- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-jgraph-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$layout-jgraph-impl/builds/2011-12-23_20-31-23/archive/org.cytoscape/layout-jgraph-impl/3.0.0-alpha8-SNAPSHOT/layout-jgraph-impl-3.0.0-alpha8-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-jgraph-impl/target/layout-jgraph-impl-3.0.0-alpha8-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$layout-jgraph-impl/builds/2011-12-23_20-31-23/archive/org.cytoscape/layout-jgraph-impl/3.0.0-alpha8-20111224.014506-343/layout-jgraph-impl-3.0.0-alpha8-20111224.014506-343.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-jgraph-impl/target/layout-jgraph-impl-3.0.0-alpha8-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$layout-jgraph-impl/builds/2011-12-23_20-31-23/archive/org.cytoscape/layout-jgraph-impl/3.0.0-alpha8-20111224.014506-343/layout-jgraph-impl-3.0.0-alpha8-20111224.014506-343-sources.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-prefuse-impl [org.cytoscape.prefuse.layouts.internal] 3.0.0-alpha8-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ layout-prefuse-impl --- [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ layout-prefuse-impl --- [INFO] Compiling 3 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-prefuse-impl/target/classes> [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-prefuse-impl/src/test/resources> [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ layout-prefuse-impl --- [INFO] [INFO] --- maven-compiler-plugin:2.3.2:testCompile (default-testCompile) @ layout-prefuse-impl --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.10:test (default-test) @ layout-prefuse-impl --- [INFO] No tests to run. [INFO] Surefire report directory: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-prefuse-impl/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] --- maven-bundle-plugin:2.3.4:bundle (default-bundle) @ layout-prefuse-impl --- ignoring exception during new ExecutedMojo null [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (attach-sources) @ layout-prefuse-impl --- [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-prefuse-impl/target/layout-prefuse-impl-3.0.0-alpha8-SNAPSHOT-sources.jar> [INFO] [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-prefuse-impl/target/layout-prefuse-impl-3.0.0-alpha8-SNAPSHOT.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/layout-prefuse-impl-3.0.0-alpha8-SNAPSHOT.jar [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-prefuse-impl/pom.xml> to /opt/tomcat-home/.m2/repository/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/layout-prefuse-impl-3.0.0-alpha8-SNAPSHOT.pom [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ layout-prefuse-impl --- [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-prefuse-impl/target/layout-prefuse-impl-3.0.0-alpha8-SNAPSHOT-sources.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/layout-prefuse-impl-3.0.0-alpha8-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-bundle-plugin:2.3.4:install (default-install) @ layout-prefuse-impl --- [INFO] Installing org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/layout-prefuse-impl-3.0.0-alpha8-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ layout-prefuse-impl --- Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (2 KB at 13.8 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/layout-prefuse-impl-3.0.0-alpha8-20111224.014513-343.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/layout-prefuse-impl-3.0.0-alpha8-20111224.014513-343.jar (12 KB at 125.1 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/layout-prefuse-impl-3.0.0-alpha8-20111224.014513-343.pom Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/layout-prefuse-impl-3.0.0-alpha8-20111224.014513-343.pom (3 KB at 34.3 KB/sec) Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/maven-metadata.xml Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/maven-metadata.xml (559 B at 6.9 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (2 KB at 17.4 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/maven-metadata.xml (559 B at 8.0 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/layout-prefuse-impl-3.0.0-alpha8-20111224.014513-343-sources.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/layout-prefuse-impl-3.0.0-alpha8-20111224.014513-343-sources.jar (7 KB at 73.5 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/maven-metadata.xml (2 KB at 14.6 KB/sec) [INFO] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [INFO] --- maven-bundle-plugin:2.3.4:deploy (default-deploy) @ layout-prefuse-impl --- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-prefuse-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$layout-prefuse-impl/builds/2011-12-23_20-31-23/archive/org.cytoscape/layout-prefuse-impl/3.0.0-alpha8-SNAPSHOT/layout-prefuse-impl-3.0.0-alpha8-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-prefuse-impl/target/layout-prefuse-impl-3.0.0-alpha8-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$layout-prefuse-impl/builds/2011-12-23_20-31-23/archive/org.cytoscape/layout-prefuse-impl/3.0.0-alpha8-20111224.014513-343/layout-prefuse-impl-3.0.0-alpha8-20111224.014513-343.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/layout-prefuse-impl/target/layout-prefuse-impl-3.0.0-alpha8-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$layout-prefuse-impl/builds/2011-12-23_20-31-23/archive/org.cytoscape/layout-prefuse-impl/3.0.0-alpha8-20111224.014513-343/layout-prefuse-impl-3.0.0-alpha8-20111224.014513-343-sources.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.linkout-impl [org.cytoscape.linkout.internal] 3.0.0-alpha8-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ linkout-impl --- [INFO] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ linkout-impl --- [INFO] Compiling 9 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/linkout-impl/target/classes> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/linkout-impl/src/main/java/org/cytoscape/linkout/internal/PropsReader.java>:[4,29] cannot find symbol symbol : class AbstractConfigDirPropsReader location: package org.cytoscape.property [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/linkout-impl/src/main/java/org/cytoscape/linkout/internal/PropsReader.java>:[7,33] cannot find symbol symbol: class AbstractConfigDirPropsReader public class PropsReader extends AbstractConfigDirPropsReader { [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/linkout-impl/src/main/java/org/cytoscape/linkout/internal/PropsReader.java>:[8,23] cannot find symbol symbol : class SavePolicy location: class org.cytoscape.linkout.internal.PropsReader [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/linkout-impl/src/main/java/org/cytoscape/linkout/internal/CyActivator.java>:[33,20] cannot find symbol symbol : constructor LinkOut(org.cytoscape.linkout.internal.PropsReader,org.cytoscape.service.util.CyServiceRegistrar,org.cytoscape.util.swing.OpenBrowser,org.cytoscape.application.CyApplicationConfiguration) location: class org.cytoscape.linkout.internal.LinkOut [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/linkout-impl/src/main/java/org/cytoscape/linkout/internal/CyActivator.java>:[38,2] registerService(org.osgi.framework.BundleContext,java.lang.Object,java.lang.Class<?>,java.util.Properties) in org.cytoscape.service.util.AbstractCyActivator cannot be applied to (org.osgi.framework.BundleContext,org.cytoscape.linkout.internal.PropsReader,java.lang.Class<org.cytoscape.property.CyProperty>,java.util.Properties) [INFO] 5 errors [INFO] ------------------------------------------------------------- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/linkout-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$linkout-impl/builds/2011-12-23_20-31-23/archive/org.cytoscape/linkout-impl/3.0.0-alpha8-SNAPSHOT/linkout-impl-3.0.0-alpha8-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [4.499s] [INFO] org.cytoscape.biopax-impl [org.cytoscape.biopax] .. SUCCESS [11.299s] [INFO] Command Executor .................................. SUCCESS [5.029s] [INFO] org.cytoscape.equations-impl ...................... SUCCESS [10.739s] [INFO] model-impl-parent ................................. SUCCESS [0.581s] [INFO] org.cytoscape.model-impl .......................... SUCCESS [20.096s] [INFO] viewmodel-impl-parent ............................. SUCCESS [0.543s] [INFO] org.cytoscape.viewmodel-impl ...................... SUCCESS [7.087s] [INFO] Ding Implementation Parent Pom .................... SUCCESS [0.536s] [INFO] org.cytoscape.util-intr ........................... SUCCESS [6.444s] [INFO] org.cytoscape.spacial ............................. SUCCESS [9.991s] [INFO] org.cytoscape.graph-render ........................ SUCCESS [7:42.600s] [INFO] org.cytoscape.ding-presentation-impl .............. SUCCESS [22.373s] [INFO] org.cytoscape.core-task-impl ...................... SUCCESS [41.181s] [INFO] org.cytoscape.cpath2-impl [org.cytoscape.cpath2] .. SUCCESS [17.576s] [INFO] org.cytoscape.ding-customgraphics-manager-impl .... SUCCESS [5.731s] [INFO] io-impl-parent .................................... SUCCESS [0.630s] [INFO] org.cytoscape.io-impl [org.cytoscape.io.internal] . SUCCESS [23.634s] [INFO] event-impl-parent ................................. SUCCESS [0.487s] [INFO] org.cytoscape.event-impl .......................... SUCCESS [14.384s] [INFO] org.cytoscape.layout-impl ......................... SUCCESS [5.086s] [INFO] org.cytoscape.ding-impl-performance-debug ......... SUCCESS [33.784s] [INFO] org.cytoscape.editor-impl ......................... SUCCESS [8.445s] [INFO] org.cytoscape.equations-functions-impl ............ SUCCESS [8.707s] [INFO] org.cytoscape.event-impl-it ....................... SUCCESS [9.479s] [INFO] org.cytoscape.filter-impl [org.cytoscape.filter.internal] SUCCESS [11.015s] [INFO] GraphML Reader and Writer for Cytoscape 3 ......... SUCCESS [10.503s] [INFO] org.cytoscape.io-impl-performance ................. SUCCESS [31.569s] [INFO] org.cytoscape.layout-cytoscape-impl [csapps.layout] SUCCESS [8.606s] [INFO] org.cytoscape.layout-jgraph-impl [csapps.layout] .. SUCCESS [5.763s] [INFO] org.cytoscape.layout-prefuse-impl [org.cytoscape.prefuse.layouts.internal] SUCCESS [7.095s] [INFO] org.cytoscape.linkout-impl [org.cytoscape.linkout.internal] FAILURE [1.283s] [INFO] org.cytoscape.log-swing-impl [org.cytoscape.log.internal] SKIPPED [INFO] Manual Layout ..................................... SKIPPED [INFO] NetworkAnalyzer ................................... SKIPPED [INFO] Advanced Network Merge ............................ SKIPPED [INFO] org.cytoscape.app-impl ............................ SKIPPED [INFO] org.cytoscape.presentation-impl [org.cytoscape.view.presentation.internal] SKIPPED [INFO] org.cytoscape.property.internal ................... SKIPPED [INFO] org.cytoscape.psi-mi-impl [org.cytoscape.psi_mi.internal] SKIPPED [INFO] org.cytoscape.sbml-impl [org.cytoscape.sbml.internal] SKIPPED [INFO] org.cytoscape.search-impl [org.cytoscape.search.internal] SKIPPED [INFO] org.cytoscape.session-impl ........................ SKIPPED [INFO] Cytoscape Swing Application Impl .................. SKIPPED [INFO] Cytoscape Table Browser Implementation ............ SKIPPED [INFO] org.cytoscape.table-import-impl [org.cytoscape.tableimport.internal] SKIPPED [INFO] org.cytoscape.vizmap-gui-impl ..................... SKIPPED [INFO] vizmap-impl-parent ................................ SKIPPED [INFO] org.cytoscape.view.vizmap-impl .................... SKIPPED [INFO] org.cytoscape.io.webservice-biomart-client-impl [org.cytoscape.io.webservice.biomart] SKIPPED [INFO] org.cytoscape.webservice-impl [org.cytoscape.webservice.internal] SKIPPED [INFO] org.cytoscape.webservice-ncbi-client-impl [org.cytoscape.webservice.ncbi] SKIPPED [INFO] work-swing-impl-parent ............................ SKIPPED [INFO] org.cytoscape.work-swing-impl ..................... SKIPPED [INFO] org.cytoscape.application-impl .................... SKIPPED [INFO] org.cytoscape.webservice-psicquic-client-impl [org.cytoscape.webservice.psicquic] SKIPPED [INFO] datasource-impl ................................... SKIPPED [INFO] datasource-biogrid-impl ........................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 13:48.556s [INFO] Finished at: Fri Dec 23 20:45:16 GMT-05:00 2011 [INFO] Final Memory: 63M/162M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:compile (default-compile) on project linkout-impl: Compilation failure cause : Compilation failure Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:compile (default-compile) on project linkout-impl: Compilation failure at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:616) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) at java.util.concurrent.FutureTask.run(FutureTask.java:166) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) at java.lang.Thread.run(Thread.java:636) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:656) at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
