See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/282/changes>
Changes: [clopes] Fixes #553 : [session] Write/read multiple .props files: - Had to modify the CySession interface: getCytoscapeProperties() renamed to getProperties(); and it now returns Map<String, Properties>--so the CyProperty names can be passed to the session writer. - Loads Cy2 session_cytoscape.props file as a CyProperty named "session". Cy2 Session Reader: node/edge linkout properties (and other ones) added to the reader's ignore list. ------------------------------------------ [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io.internal] 3.0.0-alpha8-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-jaxb2-plugin:0.7.4:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/lib/jvm/java-6-openjdk/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.7.4:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.4:compile, org.codehaus.plexus:plexus-utils:jar:1.1:compile, junit:junit:jar:4.8.1:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.6:compile, com.sun.xml.bind:jaxb-impl:jar:2.1.13:compile, javax.xml.bind:jaxb-api:jar:2.1:compile, javax.xml.stream:stax-api:jar:1.0-2:compile, javax.activation:activation:jar:1.1:compile, org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.13.MR2:compile, com.sun.codemodel:codemodel:jar:2.3:compile, com.sun.xml.dtd-parser:dtd-parser:jar:1.1:compile, com.sun.istack:istack-commons-tools:jar:2.2.MR1:compile, org.apache.ant:ant:jar:1.7.0:compile, org.apache.ant:ant-launcher:jar:1.7.0:compile, relaxngDatatype:relaxngDatatype:jar:20020414:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.kohsuke.rngom:rngom:jar:20100718:compile, com.sun.xsom:xsom:jar:20100725:compile, sun.jdk:tools:jar:1.5.0:system] [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/src/main/resources/xsd> [INFO] schemaIncludes:[Ljava.lang.String;@6e59be [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/src/main/resources/xsd> [INFO] bindingIncludes:[Ljava.lang.String;@c5fb6e [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] specVersion:2.1 [INFO] schemaFiles (calculated):[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/src/main/resources/xsd/vizmap.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'. Using java.util.ServiceLoader [INFO] Checking up-to-date depends [[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/src/main/resources/xsd/vizmap.xsd,> <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/pom.xml]].> [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1325887359000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/target/generated-sources/xjc].> [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/AttributeType.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/Dependency.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/Edge.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/Network.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/Node.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/Vizmap.java [INFO] Finished execution. [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ io-impl --- [INFO] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ io-impl --- [INFO] Compiling 172 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/target/classes> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/src/main/java/org/cytoscape/io/internal/write/session/SessionWriterImpl.java>:[289,48] cannot find symbol symbol : method getProperties() location: class org.cytoscape.session.CySession [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/src/main/java/org/cytoscape/io/internal/read/session/AbstractSessionReader.java>:[111,39] cannot find symbol symbol : method properties(java.util.Map<java.lang.String,java.util.Properties>) location: class org.cytoscape.session.CySession.Builder [INFO] 2 errors [INFO] ------------------------------------------------------------- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$io-impl/ws/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$io-impl/builds/2012-01-06_17-02-55/archive/org.cytoscape/io-impl/3.0.0-alpha8-SNAPSHOT/io-impl-3.0.0-alpha8-SNAPSHOT.pom -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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