Author: pwang
Date: 2012-01-13 16:22:06 -0800 (Fri, 13 Jan 2012)
New Revision: 28018
Added:
core3/impl/trunk/core-task-impl/src/main/java/org/cytoscape/task/internal/export/table/SelectExportTableTask.java
Log:
Original creation
Added:
core3/impl/trunk/core-task-impl/src/main/java/org/cytoscape/task/internal/export/table/SelectExportTableTask.java
===================================================================
---
core3/impl/trunk/core-task-impl/src/main/java/org/cytoscape/task/internal/export/table/SelectExportTableTask.java
(rev 0)
+++
core3/impl/trunk/core-task-impl/src/main/java/org/cytoscape/task/internal/export/table/SelectExportTableTask.java
2012-01-14 00:22:06 UTC (rev 28018)
@@ -0,0 +1,88 @@
+package org.cytoscape.task.internal.export.table;
+
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Set;
+
+import org.cytoscape.work.AbstractTask;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.Tunable;
+import org.cytoscape.work.util.ListSingleSelection;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyNetworkManager;
+import org.cytoscape.model.CyTable;
+import org.cytoscape.model.CyTableManager;
+import org.cytoscape.io.write.CyTableWriterManager;
+
+import java.util.Iterator;
+import java.util.HashMap;
+import java.util.Collections;
+
+
+public class SelectExportTableTask extends AbstractTask {
+
+ @Tunable(description = "Select a table to export:")
+ public ListSingleSelection<String> selectTable;
+
+ private final CyTableWriterManager writerManager;
+ private final CyTableManager cyTableManagerServiceRef;
+ private final CyNetworkManager cyNetworkManagerServiceRef;
+
+ private HashMap<CyTable, CyNetwork> tableNetworkMap = new
HashMap<CyTable, CyNetwork>();
+ private HashMap<String, CyTable> titleTableMap = new HashMap<String,
CyTable>();
+
+ public SelectExportTableTask (CyTableWriterManager
writerManager,CyTableManager cyTableManagerServiceRef, CyNetworkManager
cyNetworkManagerServiceRef){
+ this.cyTableManagerServiceRef = cyTableManagerServiceRef;
+ this.writerManager = writerManager;
+ this.cyNetworkManagerServiceRef = cyNetworkManagerServiceRef;
+
+ populateTableNetowrkMap();
+
+ final List<String> options = new ArrayList<String>();
+ Set<CyTable> tableSet =
this.cyTableManagerServiceRef.getAllTables(false);
+
+ Iterator<CyTable> it = tableSet.iterator();
+ while (it.hasNext()){
+ CyTable tbl = it.next();
+
+ CyNetwork net = this.tableNetworkMap.get(tbl);
+
+ String title = tbl.getTitle();
+ if (net != null){
+ title = net.getRow(net).get("name",
String.class)+" -- "+title;
+ }
+
+ options.add(title);
+ this.titleTableMap.put(title, tbl);
+ }
+
+ Collections.sort(options);
+ selectTable = new ListSingleSelection<String>(options);
+ }
+
+
+ private void populateTableNetowrkMap() {
+
+ Iterator<CyNetwork> it =
this.cyNetworkManagerServiceRef.getNetworkSet().iterator();
+
+ while (it.hasNext()){
+ CyNetwork net = it.next();
+ this.tableNetworkMap.put(net.getDefaultNetworkTable(),
net);
+ this.tableNetworkMap.put(net.getDefaultNodeTable(),
net);
+ this.tableNetworkMap.put(net.getDefaultEdgeTable(),
net);
+ }
+ }
+
+
+ @Override
+ public void run(TaskMonitor tm) throws IOException {
+
+ //Get the selected table
+ final String selectedTitle = selectTable.getSelectedValue();
+ CyTable tbl = this.titleTableMap.get(selectedTitle);
+
+ // Export the selected table
+ this.insertTasksAfterCurrentTask(new
CyTableWriter(writerManager, tbl));
+ }
+}
Property changes on:
core3/impl/trunk/core-task-impl/src/main/java/org/cytoscape/task/internal/export/table/SelectExportTableTask.java
___________________________________________________________________
Added: svn:executable
+ *
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