Author: pwang
Date: 2012-02-10 15:59:39 -0800 (Fri, 10 Feb 2012)
New Revision: 28238
Modified:
csplugins/trunk/ucsd/pwang/subnetworkByCategory/src/main/java/org/cytoscape/subnetwork/SubnetworkByCategory.java
Log:
Support category attribute type String and Integer
Modified:
csplugins/trunk/ucsd/pwang/subnetworkByCategory/src/main/java/org/cytoscape/subnetwork/SubnetworkByCategory.java
===================================================================
---
csplugins/trunk/ucsd/pwang/subnetworkByCategory/src/main/java/org/cytoscape/subnetwork/SubnetworkByCategory.java
2012-02-10 22:59:21 UTC (rev 28237)
+++
csplugins/trunk/ucsd/pwang/subnetworkByCategory/src/main/java/org/cytoscape/subnetwork/SubnetworkByCategory.java
2012-02-10 23:59:39 UTC (rev 28238)
@@ -174,7 +174,7 @@
}
- //////
+ ////// attribute type could be String or Integer
private HashMap getNodeCategoryMap(CyNetwork net, String attributeName){
HashMap categoryMap = new HashMap();
@@ -185,12 +185,12 @@
CyNode node = (CyNode)
Cytoscape.getRootGraph().getNode(nodeIndices[i]);
String nodeId = node.getIdentifier();
- if (attributes.getAttribute(nodeId,
attributeName.toLowerCase()) == null){
- continue;
+ String attValue = "unknown"; // default, if attrValue
is null
+
+ if (attributes.getAttribute(nodeId, attributeName) !=
null){
+ attValue = attributes.getAttribute(nodeId,
attributeName).toString();
}
-
- String attValue = attributes.getAttribute(nodeId,
attributeName.toLowerCase()).toString();
-
+
if (categoryMap.containsKey(attValue.toLowerCase())){
Vector nodeVect =
(Vector)categoryMap.get(attValue.toLowerCase());
nodeVect.add(node);
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