Author: pwang
Date: 2012-02-17 10:42:33 -0800 (Fri, 17 Feb 2012)
New Revision: 28307
Modified:
csplugins/trunk/ucsd/pwang/subnetworkByCategory/src/main/java/org/cytoscape/subnetwork/DetailedViewLayout.java
Log:
Clean up
Modified:
csplugins/trunk/ucsd/pwang/subnetworkByCategory/src/main/java/org/cytoscape/subnetwork/DetailedViewLayout.java
===================================================================
---
csplugins/trunk/ucsd/pwang/subnetworkByCategory/src/main/java/org/cytoscape/subnetwork/DetailedViewLayout.java
2012-02-17 18:41:10 UTC (rev 28306)
+++
csplugins/trunk/ucsd/pwang/subnetworkByCategory/src/main/java/org/cytoscape/subnetwork/DetailedViewLayout.java
2012-02-17 18:42:33 UTC (rev 28307)
@@ -5,14 +5,10 @@
import java.util.ArrayList;
import java.util.HashMap;
-import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.Map.Entry;
-
-import cytoscape.Cytoscape;
-import cytoscape.data.CyAttributes;
import cytoscape.layout.CyLayoutAlgorithm;
import cytoscape.layout.CyLayouts;
import cytoscape.view.CyNetworkView;
@@ -25,23 +21,6 @@
public static void layout(CyNetworkView view, CyNetworkView overview,
Map<String,Set<Node>> module_nodes)
{
- //Get values of Parent Module attribute
-// CyAttributes nodeAttr = Cytoscape.getNodeAttributes();
-// Map<String,Set<Node>> module_nodes = new
HashMap<String,Set<Node>>();
-// for (int ni : view.getNetwork().getNodeIndicesArray())
-// {
-// String nodeID =
view.getNetwork().getNode(ni).getIdentifier();
-// String parent = nodeAttr.getAttribute(nodeID,
"nestedNetworkId"
/*VisualStyleObserver.PARENT_MODULE_ATTRIBUTE_NAME*/).toString();
-//
-// Set<Node> sset = module_nodes.get(parent);
-// if (sset==null)
-// {
-// sset = new HashSet<Node>();
-// sset.add(view.getNetwork().getNode(ni));
-// module_nodes.put(parent, sset);
-// }else sset.add(view.getNetwork().getNode(ni));
-// }
-
//For each parent module
CyLayoutAlgorithm fd = CyLayouts.getLayout("force-directed");
fd.setSelectedOnly(true);
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