Author: rodche
Date: 2012-03-29 18:49:31 -0700 (Thu, 29 Mar 2012)
New Revision: 28703
Modified:
core3/impl/trunk/biopax-impl/pom.xml
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXAction.java
Log:
Made paxtools dependencies have 'provided' scope; updated one constructor args
(due to the abstract class it extends has been recently changed)
Modified: core3/impl/trunk/biopax-impl/pom.xml
===================================================================
--- core3/impl/trunk/biopax-impl/pom.xml 2012-03-29 23:32:04 UTC (rev
28702)
+++ core3/impl/trunk/biopax-impl/pom.xml 2012-03-30 01:49:31 UTC (rev
28703)
@@ -53,11 +53,13 @@
<groupId>cytoscape-temp</groupId>
<artifactId>paxtools-core</artifactId>
<version>4.1.1</version>
- </dependency>
+ <scope>provided</scope>
+ </dependency>
<dependency>
<groupId>cytoscape-temp</groupId>
<artifactId>biopax-converter</artifactId>
<version>4.1.1</version>
+ <scope>provided</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
Modified:
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXAction.java
===================================================================
---
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXAction.java
2012-03-29 23:32:04 UTC (rev 28702)
+++
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXAction.java
2012-03-30 01:49:31 UTC (rev 28703)
@@ -44,7 +44,6 @@
import org.cytoscape.model.CyNetwork;
import org.cytoscape.util.swing.FileChooserFilter;
import org.cytoscape.util.swing.FileUtil;
-import org.cytoscape.view.model.CyNetworkViewManager;
import org.cytoscape.work.TaskIterator;
import org.cytoscape.work.TaskManager;
import org.slf4j.Logger;
@@ -71,9 +70,9 @@
private final TaskManager taskManager;
public ExportAsBioPAXAction(FileUtil fileUtil, CyApplicationManager
applicationManager,
- CyFileFilter bioPaxFilter, TaskManager taskManager,
final CyNetworkViewManager networkViewManager)
+ CyFileFilter bioPaxFilter, TaskManager taskManager)
{
- super("BioPAX", applicationManager,"network",
networkViewManager);
+ super("BioPAX", applicationManager,"network");
setPreferredMenu("File.Export.Network");
this.fileUtil = fileUtil;
this.applicationManager = applicationManager;
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