Author: rodche
Date: 2012-03-29 19:19:03 -0700 (Thu, 29 Mar 2012)
New Revision: 28705
Modified:
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/BioPaxUtil.java
core3/impl/trunk/cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/util/BioPaxUtil.java
Log:
Changed to catch a Throwable in the BioPAX parser (since recently, biopax-impl
and cpath2-impl plugins are broken due to StAX impl. cannot be auto-discovered
at runtime anymore for some reason... Strange...)
Modified:
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/BioPaxUtil.java
===================================================================
---
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/BioPaxUtil.java
2012-03-30 02:05:04 UTC (rev 28704)
+++
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/BioPaxUtil.java
2012-03-30 02:19:03 UTC (rev 28705)
@@ -137,7 +137,7 @@
if(model != null &&
BioPAXLevel.L2.equals(model.getLevel())) {
model = new OneTwoThree().filter(model);
}
- } catch (Exception e) {
+ } catch (Throwable e) {
log.warn("Import failed: " + e);
}
return model;
Modified:
core3/impl/trunk/cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/util/BioPaxUtil.java
===================================================================
---
core3/impl/trunk/cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/util/BioPaxUtil.java
2012-03-30 02:05:04 UTC (rev 28704)
+++
core3/impl/trunk/cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/util/BioPaxUtil.java
2012-03-30 02:19:03 UTC (rev 28705)
@@ -157,7 +157,7 @@
if(model != null &&
BioPAXLevel.L2.equals(model.getLevel())) {
model = new OneTwoThree().filter(model);
}
- } catch (Exception e) {
+ } catch (Throwable e) {
log.warn("Import failed: " + e);
}
return model;
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