Author: mes
Date: 2012-04-06 12:57:56 -0700 (Fri, 06 Apr 2012)
New Revision: 28751
Modified:
csplugins/trunk/ucsd/mes/genomespace/genomespace-libs-plugin/pom.xml
csplugins/trunk/ucsd/mes/genomespace/genomespace-plugin/pom.xml
Log:
updated dependencies for GenomeSpace
Modified: csplugins/trunk/ucsd/mes/genomespace/genomespace-libs-plugin/pom.xml
===================================================================
--- csplugins/trunk/ucsd/mes/genomespace/genomespace-libs-plugin/pom.xml
2012-04-06 18:54:00 UTC (rev 28750)
+++ csplugins/trunk/ucsd/mes/genomespace/genomespace-libs-plugin/pom.xml
2012-04-06 19:57:56 UTC (rev 28751)
@@ -53,6 +53,76 @@
</plugins>
</build>
+ <repositories>
+ <repository>
+ <id>maven2-repository.dev.java.net</id>
+ <name>Java.net Repository for Maven</name>
+ <url>http://download.java.net/maven/2/</url>
+ <layout>default</layout>
+ </repository>
+ <repository>
+ <id>com.springsource.repository.bundles.release</id>
+ <name>SpringSource Enterprise Bundle Repository - SpringSource
Bundle Releases</name>
+ <url>http://repository.springsource.com/maven/bundles/release</url>
+ </repository>
+
+ <repository>
+ <id>com.springsource.repository.bundles.external</id>
+ <name>SpringSource Enterprise Bundle Repository - External Bundle
Releases</name>
+
<url>http://repository.springsource.com/maven/bundles/external</url>
+ </repository>
+ <repository>
+ <id>com.springsource.repository.libraries.release</id>
+ <name>SpringSource Enterprise Bundle Repository - SpringSource
Library Releases</name>
+
<url>http://repository.springsource.com/maven/libraries/release</url>
+ </repository>
+
+ <repository>
+ <id>com.springsource.repository.libraries.external</id>
+ <name>SpringSource Enterprise Bundle Repository - External Library
Releases</name>
+
<url>http://repository.springsource.com/maven/libraries/external</url>
+ </repository>
+ <repository>
+ <id>java.net</id>
+ <name>Java.net</name>
+ <url>http://download.java.net/maven/2/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_snapshots</id>
+ <snapshots>
+ <enabled>true</enabled>
+ </snapshots>
+ <releases>
+ <enabled>false</enabled>
+ </releases>
+ <name>Cytoscape Snapshots</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_releases</id>
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <releases>
+ <enabled>true</enabled>
+ </releases>
+ <name>Cytoscape Releases</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_thirdparty</id>
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <releases>
+ <enabled>true</enabled>
+ </releases>
+ <name>Cytoscape Third Party</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/</url>
+ </repository>
+ </repositories>
+
+
<dependencies>
<dependency>
<groupId>cytoscape</groupId>
@@ -63,7 +133,7 @@
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
- <version>1.3</version>
+ <version>1.4</version>
</dependency>
<dependency>
<groupId>commons-httpclient</groupId>
@@ -98,22 +168,22 @@
<dependency>
<groupId>org.codehaus.jettison</groupId>
<artifactId>jettison</artifactId>
- <version>1.2</version>
+ <version>1.3</version>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-core</artifactId>
- <version>1.5-ea09</version>
+ <version>1.11</version>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-client</artifactId>
- <version>1.5-ea09</version>
+ <version>1.11</version>
</dependency>
<dependency>
<groupId>com.sun.jersey.contribs</groupId>
<artifactId>jersey-apache-client</artifactId>
- <version>1.5-ea09</version>
+ <version>1.11</version>
</dependency>
<dependency>
<groupId>javax.ws.rs</groupId>
@@ -123,22 +193,22 @@
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-core-asl</artifactId>
- <version>1.5.5</version>
+ <version>1.9.4</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-jaxrs</artifactId>
- <version>1.5.5</version>
+ <version>1.9.2</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-mapper-asl</artifactId>
- <version>1.5.5</version>
+ <version>1.9.2</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-xc</artifactId>
- <version>1.5.5</version>
+ <version>1.9.2</version>
</dependency>
<dependency>
<groupId>com.jamesmurty.utils</groupId>
@@ -150,47 +220,34 @@
<artifactId>stax-api</artifactId>
<version>1.0.1</version>
</dependency>
+ <dependency>
+ <groupId>org.apache.servicemix.bundles</groupId>
+ <artifactId>org.apache.servicemix.bundles.aws-java-sdk</artifactId>
+ <version>1.3.0_1</version>
+ <exclusions>
+ <exclusion>
+ <artifactId>httpclient</artifactId>
+ <groupId>org.apache.httpcomponents</groupId>
+ </exclusion>
+ <exclusion>
+ <artifactId>commons-logging</artifactId>
+ <groupId>commons-logging</groupId>
+ </exclusion>
+ <exclusion>
+ <artifactId>commons-codec</artifactId>
+ <groupId>commons-codec</groupId>
+ </exclusion>
+ <exclusion>
+ <artifactId>httpcore</artifactId>
+ <groupId>org.apache.httpcomponents</groupId>
+ </exclusion>
+ </exclusions>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.httpcomponents</groupId>
+
<artifactId>com.springsource.org.apache.httpcomponents.httpclient</artifactId>
+ <version>4.1.1</version>
+ </dependency>
+
</dependencies>
-
- <repositories>
- <repository>
- <id>java.net</id>
- <name>Java.net</name>
- <url>http://download.java.net/maven/2/</url>
- </repository>
- <repository>
- <id>cytoscape_snapshots</id>
- <snapshots>
- <enabled>true</enabled>
- </snapshots>
- <releases>
- <enabled>false</enabled>
- </releases>
- <name>Cytoscape Snapshots</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url>
- </repository>
- <repository>
- <id>cytoscape_releases</id>
- <snapshots>
- <enabled>false</enabled>
- </snapshots>
- <releases>
- <enabled>true</enabled>
- </releases>
- <name>Cytoscape Releases</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url>
- </repository>
- <repository>
- <id>cytoscape_thirdparty</id>
- <snapshots>
- <enabled>false</enabled>
- </snapshots>
- <releases>
- <enabled>true</enabled>
- </releases>
- <name>Cytoscape Third Party</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/</url>
- </repository>
- </repositories>
-
</project>
Modified: csplugins/trunk/ucsd/mes/genomespace/genomespace-plugin/pom.xml
===================================================================
--- csplugins/trunk/ucsd/mes/genomespace/genomespace-plugin/pom.xml
2012-04-06 18:54:00 UTC (rev 28750)
+++ csplugins/trunk/ucsd/mes/genomespace/genomespace-plugin/pom.xml
2012-04-06 19:57:56 UTC (rev 28751)
@@ -53,6 +53,48 @@
</plugins>
</build>
+ <repositories>
+ <repository>
+ <id>java.net</id>
+ <name>Java.net</name>
+ <url>http://download.java.net/maven/2/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_snapshots</id>
+ <snapshots>
+ <enabled>true</enabled>
+ </snapshots>
+ <releases>
+ <enabled>false</enabled>
+ </releases>
+ <name>Cytoscape Snapshots</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_releases</id>
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <releases>
+ <enabled>true</enabled>
+ </releases>
+ <name>Cytoscape Releases</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_thirdparty</id>
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <releases>
+ <enabled>true</enabled>
+ </releases>
+ <name>Cytoscape Third Party</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/</url>
+ </repository>
+ </repositories>
+
+
<dependencies>
<dependency>
<groupId>cytoscape</groupId>
@@ -81,7 +123,7 @@
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-json</artifactId>
- <version>1.5-ea09</version>
+ <version>1.11</version>
</dependency>
<dependency>
<groupId>org.genomespace</groupId>
@@ -104,46 +146,4 @@
<version>0.1-SNAPSHOT</version>
</dependency>
</dependencies>
-
- <repositories>
- <repository>
- <id>java.net</id>
- <name>Java.net</name>
- <url>http://download.java.net/maven/2/</url>
- </repository>
- <repository>
- <id>cytoscape_snapshots</id>
- <snapshots>
- <enabled>true</enabled>
- </snapshots>
- <releases>
- <enabled>false</enabled>
- </releases>
- <name>Cytoscape Snapshots</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url>
- </repository>
- <repository>
- <id>cytoscape_releases</id>
- <snapshots>
- <enabled>false</enabled>
- </snapshots>
- <releases>
- <enabled>true</enabled>
- </releases>
- <name>Cytoscape Releases</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url>
- </repository>
- <repository>
- <id>cytoscape_thirdparty</id>
- <snapshots>
- <enabled>false</enabled>
- </snapshots>
- <releases>
- <enabled>true</enabled>
- </releases>
- <name>Cytoscape Third Party</name>
-
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/</url>
- </repository>
- </repositories>
-
</project>
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