Author: rodche Date: 2012-04-11 16:52:16 -0700 (Wed, 11 Apr 2012) New Revision: 28802
Removed: csplugins/trunk/toronto/rodche/cpathsquared-impl/src/test/java/org/cytoscape/coreplugin/cpathsquared/ Modified: csplugins/trunk/toronto/rodche/cpathsquared-impl/pom.xml Log: Configured pom.xml alike it's in the OSGi bundle app tutorial ;) No parent project declaration anymore. Modified: csplugins/trunk/toronto/rodche/cpathsquared-impl/pom.xml =================================================================== --- csplugins/trunk/toronto/rodche/cpathsquared-impl/pom.xml 2012-04-11 23:06:07 UTC (rev 28801) +++ csplugins/trunk/toronto/rodche/cpathsquared-impl/pom.xml 2012-04-11 23:52:16 UTC (rev 28802) @@ -1,106 +1,214 @@ -<?xml version="1.0" encoding="UTF-8"?> -<project xmlns="http://maven.apache.org/POM/4.0.0"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd";> - <parent> - <groupId>org.cytoscape</groupId> - <artifactId>impl-parent</artifactId> - <version>3.0.0-alpha8-SNAPSHOT</version> - </parent> +<project xmlns="http://maven.apache.org/POM/4.0.0"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; + xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd";> + + <groupId>org.cytoscape</groupId> <properties> <bundle.namespace>org.cytoscape.cpathsquared</bundle.namespace> - <cytoscape.impl.version>3.0.0-alpha8-SNAPSHOT</cytoscape.impl.version> <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding> - <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding> - <bundle.symbolicName>org.cytoscape.cpathsquared-impl</bundle.symbolicName> + <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding> + <bundle.symbolicName>org.cytoscape.cpathsquared-impl</bundle.symbolicName> </properties> <modelVersion>4.0.0</modelVersion> <artifactId>cpathsquared-impl</artifactId> <version>0.0.1-SNAPSHOT</version> <name>${bundle.symbolicName} [${bundle.namespace}]</name> + <packaging>bundle</packaging> - <scm> - <connection>scm:svn:http://chianti.ucsd.edu/svn/csplugins/trunk/toronto/rodche/cpathsquared-impl</connection> - <developerConnection>scm:svn:svn+ssh://grenache.ucsd.edu/cellar/common/svn/csplugins/trunk/toronto/rodche/cpathsquared-impl</developerConnection> - <url>http://chianti.ucsd.edu/svn/csplugins/trunk/toronto/rodche/cpathsquared-impl</url> - </scm> + + <scm> + <connection>scm:svn:http://chianti.ucsd.edu/svn/csplugins/trunk/toronto/rodche/cpathsquared-impl</connection> + <developerConnection>scm:svn:svn+ssh://grenache.ucsd.edu/cellar/common/svn/csplugins/trunk/toronto/rodche/cpathsquared-impl</developerConnection> + <url>http://chianti.ucsd.edu/svn/csplugins/trunk/toronto/rodche/cpathsquared-impl</url> + </scm> + + + <build> + <resources> + <resource> + <directory>src/main/resources</directory> + </resource> + </resources> + <!-- Cytoscape requires Java 1.6 --> + <plugins> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-compiler-plugin</artifactId> + <version>2.3.2</version> + <executions> + <execution> + <id>default-testCompile</id> + <phase>test-compile</phase> + <goals> + <goal>testCompile</goal> + </goals> + </execution> + <execution> + <id>default-compile</id> + <phase>compile</phase> + <goals> + <goal>compile</goal> + </goals> + </execution> + </executions> + <configuration> + <source>1.6</source> + <target>1.6</target> + <optimize>true</optimize> + <showWarnings>true</showWarnings> + <showDeprecation>true</showDeprecation> + <compilerArguments> + <Xmaxwarns>10000</Xmaxwarns> + <Xmaxerrs>10000</Xmaxerrs> + </compilerArguments> + </configuration> + </plugin> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-surefire-plugin</artifactId> + <version>2.7.1</version> + <configuration> + <redirectTestOutputToFile>true</redirectTestOutputToFile> + </configuration> + </plugin> + <!-- Generates the OSGi metadata based on the osgi.bnd file. --> + <plugin> + <groupId>org.apache.felix</groupId> + <artifactId>maven-bundle-plugin</artifactId> + <version>2.3.7</version> + <extensions>true</extensions> + <configuration> + <instructions> + <Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName> + <Bundle-Version>${project.version}</Bundle-Version> + <Bundle-Activator>${bundle.namespace}.internal.CyActivator</Bundle-Activator> + <Export-Package>${bundle.namespace}</Export-Package> + <Private-Package>${bundle.namespace}.internal.*</Private-Package> + <Embed-Dependency> + *;groupId=org.biopax.paxtools;type=!pom;inline=true;scope=compile|runtime, + *;artifactId=cpath-api;type=!pom;inline=true;scope=compile|runtime, + *;artifactId=cpath-client;type=!pom;inline=true;scope=compile|runtime, + *;groupId=org.springframework;type=!pom;inline=true;scope=runtime + </Embed-Dependency> + <Import-Package>*;resolution:=optional</Import-Package> + </instructions> + </configuration> + </plugin> + </plugins> + </build> + + <!-- Links to the Cytoscape Maven repositories. --> + <repositories> + <repository> + <id>cytoscape_snapshots</id> + <snapshots> + </snapshots> + <releases> + <enabled>false</enabled> + </releases> + <name>Cytoscape Snapshots</name> + <url>http://code.cytoscape.org/nexus/content/repositories/snapshots/</url> + </repository> + <repository> + <id>cytoscape_releases</id> + <snapshots> + <enabled>false</enabled> + </snapshots> + <releases> + </releases> + <name>Cytoscape Releases</name> + <url>http://code.cytoscape.org/nexus/content/repositories/releases/</url> + </repository> + </repositories> + + + + + <dependencies> - <dependency> - <groupId>org.cytoscape</groupId> - <artifactId>model-api</artifactId> - <scope>provided</scope> - </dependency> - <dependency> - <groupId>org.cytoscape</groupId> - <artifactId>io-api</artifactId> - <scope>provided</scope> - </dependency> - <dependency> - <groupId>org.cytoscape</groupId> - <artifactId>viewmodel-api</artifactId> - <scope>provided</scope> - </dependency> - <dependency> - <groupId>org.cytoscape</groupId> - <artifactId>layout-api</artifactId> - <scope>provided</scope> - </dependency> - <dependency> - <groupId>org.cytoscape</groupId> - <artifactId>presentation-api</artifactId> - <scope>provided</scope> - </dependency> - <dependency> - <groupId>org.cytoscape</groupId> - <artifactId>swing-util-api</artifactId> - <scope>provided</scope> - </dependency> - <dependency> - <groupId>org.cytoscape</groupId> - <artifactId>swing-application-api</artifactId> - <scope>provided</scope> - </dependency> <dependency> <groupId>org.cytoscape</groupId> + <artifactId>model-api</artifactId> + <version>[3.0.0-alpha8-SNAPSHOT, 4.0.0)</version> + <scope>provided</scope> + </dependency> + <dependency> + <groupId>org.cytoscape</groupId> + <artifactId>io-api</artifactId> + <version>[3.0.0-alpha8-SNAPSHOT, 4.0.0)</version> + <scope>provided</scope> + </dependency> + <dependency> + <groupId>org.cytoscape</groupId> + <artifactId>viewmodel-api</artifactId> + <version>[3.0.0-alpha8-SNAPSHOT, 4.0.0)</version> + <scope>provided</scope> + </dependency> + <dependency> + <groupId>org.cytoscape</groupId> + <artifactId>layout-api</artifactId> + <version>[3.0.0-alpha8-SNAPSHOT, 4.0.0)</version> + <scope>provided</scope> + </dependency> + <dependency> + <groupId>org.cytoscape</groupId> + <artifactId>presentation-api</artifactId> + <version>[3.0.0-alpha8-SNAPSHOT, 4.0.0)</version> + <scope>provided</scope> + </dependency> + <dependency> + <groupId>org.cytoscape</groupId> + <artifactId>swing-util-api</artifactId> + <version>[3.0.0-alpha8-SNAPSHOT, 4.0.0)</version> + <scope>provided</scope> + </dependency> + <dependency> + <groupId>org.cytoscape</groupId> + <artifactId>swing-application-api</artifactId> + <version>[3.0.0-alpha8-SNAPSHOT, 4.0.0)</version> + <scope>provided</scope> + </dependency> + <dependency> + <groupId>org.cytoscape</groupId> <artifactId>vizmap-api</artifactId> + <version>[3.0.0-alpha8-SNAPSHOT, 4.0.0)</version> <scope>provided</scope> </dependency> <dependency> <groupId>org.cytoscape</groupId> <artifactId>webservice-swing-api</artifactId> - <version>3.0.0-alpha8-SNAPSHOT</version> + <version>[3.0.0-alpha8-SNAPSHOT, 4.0.0)</version> <scope>provided</scope> </dependency> <dependency> - <groupId>junit</groupId> - <artifactId>junit</artifactId> - <scope>test</scope> + <groupId>org.ops4j.pax.logging</groupId> + <artifactId>pax-logging-api</artifactId> + <version>1.5.2</version> + <scope>provided</scope> </dependency> - <dependency> - <groupId>org.mockito</groupId> - <artifactId>mockito-all</artifactId> - <scope>test</scope> - </dependency> - <dependency> - <groupId>pathwaycommons.cpath</groupId> - <artifactId>cpath-api</artifactId> - <version>5.1.0-SNAPSHOT</version> - </dependency> - <dependency> - <groupId>pathwaycommons.cpath</groupId> - <artifactId>cpath-client</artifactId> - <version>3.1.0-SNAPSHOT</version> - </dependency> - <dependency> - <groupId>org.biopax.paxtools</groupId> - <artifactId>paxtools-core</artifactId> - <version>4.1.4-SNAPSHOT</version> - </dependency> - <dependency> - <groupId>org.biopax.paxtools</groupId> - <artifactId>biopax-converter</artifactId> - <version>4.1.4-SNAPSHOT</version> - </dependency> - <!-- Spring Dependencies to embed (temporary; must use/start Spring EBR bundles instead) --> + <dependency> + <groupId>pathwaycommons.cpath</groupId> + <artifactId>cpath-api</artifactId> + <version>5.1.0-SNAPSHOT</version> + </dependency> + <dependency> + <groupId>pathwaycommons.cpath</groupId> + <artifactId>cpath-client</artifactId> + <version>3.1.0-SNAPSHOT</version> + </dependency> + <dependency> + <groupId>org.biopax.paxtools</groupId> + <artifactId>paxtools-core</artifactId> + <version>4.1.4-SNAPSHOT</version> + </dependency> + <dependency> + <groupId>org.biopax.paxtools</groupId> + <artifactId>biopax-converter</artifactId> + <version>4.1.4-SNAPSHOT</version> + </dependency> + <!-- Spring Dependencies to embed (temporary; must use/start Spring EBR + bundles instead) --> + <dependency> <groupId>org.springframework</groupId> <artifactId>spring-context</artifactId> <version>3.0.5.RELEASE</version> @@ -131,34 +239,5 @@ <scope>runtime</scope> </dependency> </dependencies> - - <build> - <plugins> - <plugin> - <groupId>org.apache.felix</groupId> - <artifactId>maven-bundle-plugin</artifactId> - <version>${maven-bundle-plugin.version}</version> - <extensions>true</extensions> - <configuration> - <instructions> - <Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName> - <Bundle-Version>${project.version}</Bundle-Version> - <Bundle-Activator>${bundle.namespace}.internal.CyActivator</Bundle-Activator> - <Export-Package> - !${bundle.namespace}.internal.*, - ${bundle.namespace}.*;version="${project.version}" - </Export-Package> - <Private-Package>${bundle.namespace}.internal.*</Private-Package> - <Embed-Dependency> - *;groupId=org.biopax.paxtools;type=!pom;inline=true;scope=compile|runtime, - *;artifactId=cpath-api;type=!pom;inline=true;scope=compile|runtime, - *;artifactId=cpath-client;type=!pom;inline=true;scope=compile|runtime, - *;groupId=org.springframework;type=!pom;inline=true;scope=runtime - </Embed-Dependency> - <Import-Package>*;resolution:=optional</Import-Package> - </instructions> - </configuration> - </plugin> - </plugins> - </build> + </project> -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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