See <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/369/changes>
Changes: [mes] Renamed task factory to be more consistent with 3.0 naming [mes] final package renames for core-task-api [mes] more package reorg for core-task-api ------------------------------------------ [...truncated 1721 lines...] [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:750: cannot find symbol [WARNING] symbol : class MapTableToNetworkTablesTaskFactory [WARNING] location: interface org.cytoscape.app.CyAppAdapter [WARNING] MapTableToNetworkTablesTaskFactory get_MapTableToNetworkTablesTaskFactory(); [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:39: package javax.help does not exist [WARNING] import javax.help.HelpBroker; [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:40: package javax.help does not exist [WARNING] import javax.help.HelpSet; [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:54: cannot find symbol [WARNING] symbol : class HelpBroker [WARNING] location: interface org.cytoscape.application.swing.CyHelpBroker [WARNING] public HelpBroker getHelpBroker(); [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:60: cannot find symbol [WARNING] symbol : class HelpSet [WARNING] location: interface org.cytoscape.application.swing.CyHelpBroker [WARNING] public HelpSet getHelpSet(); [WARNING] ^ [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:684: warning - Tag @link: reference not found: ApplyPreferredLayoutTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:379: warning - Tag @link: reference not found: ApplyVisualStyleTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:579: warning - Tag @link: reference not found: CloneNetworkTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:627: warning - Tag @link: reference not found: CreateNetworkViewTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:690: warning - Tag @link: reference not found: DeleteColumnTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:429: warning - Tag @link: reference not found: DeleteSelectedNodesAndEdgesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:708: warning - Tag @link: reference not found: DeleteTableTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:585: warning - Tag @link: reference not found: DestroyNetworkTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:591: warning - Tag @link: reference not found: DestroyNetworkViewTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:720: warning - Tag @link: reference not found: GroupNodesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:386: warning - Tag @link: reference not found: MapGlobalToLocalTableTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:750: warning - Tag @link: reference not found: MapTableToNetworkTablesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:561: warning - Tag @link: reference not found: NewEmptyNetworkViewFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:567: warning - Tag @link: reference not found: NewNetworkSelectedNodesAndEdgesTaskFatory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:573: warning - Tag @link: reference not found: NewNetworkSelectedNodesOnlyTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:657: warning - Tag @link: reference not found: NewSessionTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:726: warning - Tag @link: reference not found: UnGroupTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:379: warning - Tag @link: reference not found: ApplyVisualStyleTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:379: warning - Tag @link: reference not found: ApplyVisualStyleTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:386: warning - Tag @link: reference not found: MapGlobalToLocalTableTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:386: warning - Tag @link: reference not found: MapGlobalToLocalTableTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:429: warning - Tag @link: reference not found: DeleteSelectedNodesAndEdgesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:429: warning - Tag @link: reference not found: DeleteSelectedNodesAndEdgesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:561: warning - Tag @link: reference not found: NewEmptyNetworkViewFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:561: warning - Tag @link: reference not found: NewEmptyNetworkViewFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:567: warning - Tag @link: reference not found: NewNetworkSelectedNodesAndEdgesTaskFatory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:567: warning - Tag @link: reference not found: NewNetworkSelectedNodesAndEdgesTaskFatory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:573: warning - Tag @link: reference not found: NewNetworkSelectedNodesOnlyTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:573: warning - Tag @link: reference not found: NewNetworkSelectedNodesOnlyTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:579: warning - Tag @link: reference not found: CloneNetworkTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:579: warning - Tag @link: reference not found: CloneNetworkTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:585: warning - Tag @link: reference not found: DestroyNetworkTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:585: warning - Tag @link: reference not found: DestroyNetworkTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:591: warning - Tag @link: reference not found: DestroyNetworkViewTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:591: warning - Tag @link: reference not found: DestroyNetworkViewTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:627: warning - Tag @link: reference not found: CreateNetworkViewTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:627: warning - Tag @link: reference not found: CreateNetworkViewTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:657: warning - Tag @link: reference not found: NewSessionTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:657: warning - Tag @link: reference not found: NewSessionTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:684: warning - Tag @link: reference not found: ApplyPreferredLayoutTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:684: warning - Tag @link: reference not found: ApplyPreferredLayoutTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:690: warning - Tag @link: reference not found: DeleteColumnTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:690: warning - Tag @link: reference not found: DeleteColumnTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:708: warning - Tag @link: reference not found: DeleteTableTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:708: warning - Tag @link: reference not found: DeleteTableTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:720: warning - Tag @link: reference not found: GroupNodesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:720: warning - Tag @link: reference not found: GroupNodesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:726: warning - Tag @link: reference not found: UnGroupTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:726: warning - Tag @link: reference not found: UnGroupTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:750: warning - Tag @link: reference not found: MapTableToNetworkTablesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:750: warning - Tag @link: reference not found: MapTableToNetworkTablesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:259: warning - Tag @link: reference not found: CyEdge [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:259: warning - Tag @link: reference not found: CyEdge [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:259: warning - Tag @link: reference not found: CyEdge [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:274: warning - Tag @link: reference not found: CyEdge [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:274: warning - Tag @link: reference not found: CyEdge [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:274: warning - Tag @link: reference not found: CyEdge [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:123: warning - @param argument "views" is not a parameter name. [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:201: warning - Tag @link: reference not found: CyEdge [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/work-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/ContainsTunables.java>:37: warning - @Tunable is an unknown tag. [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/work-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/ContainsTunables.java>:37: warning - @ContainsTunable is an unknown tag. [JENKINS] Archiving javadoc [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/work-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/ContainsTunables.java>:37: warning - @Tunable is an unknown tag. [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/work-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/TaskManager.java>:37: warning - @param argument "factory" is not a parameter name. [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CyPropertyReader.java>:22: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CyPropertyReader.java>:32: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/property-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/property/AbstractConfigDirPropsReader.java>:30: warning - Tag @link: reference not found: CyProperty.DEFAULT_PROPS_CONFIG_DIR [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/property-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/property/AbstractConfigDirPropsReader.java>:51: warning - Tag @link: reference not found: CyProperty.SavePolicy.CONFIG_DIR [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/property-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/property/AbstractConfigDirPropsReader.java>:51: warning - Tag @link: reference not found: CyProperty.SavePolicy.SESSION_FILE_AND_CONFIG_DIR [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/equations-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/equations/FunctionError.java>:36: warning - @CyAPI.Final.class is an unknown tag. [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:726: warning - Tag @link: reference not found: UnGroupTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:684: warning - Tag @link: reference not found: ApplyPreferredLayoutTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:379: warning - Tag @link: reference not found: ApplyVisualStyleTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:579: warning - Tag @link: reference not found: CloneNetworkTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:627: warning - Tag @link: reference not found: CreateNetworkViewTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:690: warning - Tag @link: reference not found: DeleteColumnTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:429: warning - Tag @link: reference not found: DeleteSelectedNodesAndEdgesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:708: warning - Tag @link: reference not found: DeleteTableTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:585: warning - Tag @link: reference not found: DestroyNetworkTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:591: warning - Tag @link: reference not found: DestroyNetworkViewTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:720: warning - Tag @link: reference not found: GroupNodesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:386: warning - Tag @link: reference not found: MapGlobalToLocalTableTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:750: warning - Tag @link: reference not found: MapTableToNetworkTablesTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:561: warning - Tag @link: reference not found: NewEmptyNetworkViewFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:567: warning - Tag @link: reference not found: NewNetworkSelectedNodesAndEdgesTaskFatory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:573: warning - Tag @link: reference not found: NewNetworkSelectedNodesOnlyTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:657: warning - Tag @link: reference not found: NewSessionTaskFactory [WARNING] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:726: warning - Tag @link: reference not found: UnGroupTaskFactory [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ app-api --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/resources> [INFO] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ app-api --- [INFO] Compiling 3 source files to <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/target/classes> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[37,35] package org.cytoscape.task.visualize does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[38,35] package org.cytoscape.task.visualize does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[69,32] package org.cytoscape.task.create does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[70,32] package org.cytoscape.task.create does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[71,32] package org.cytoscape.task.create does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[72,32] package org.cytoscape.task.create does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[73,32] package org.cytoscape.task.create does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[74,32] package org.cytoscape.task.create does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[75,33] package org.cytoscape.task.destroy does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[76,33] package org.cytoscape.task.destroy does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[77,33] package org.cytoscape.task.destroy does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[78,33] package org.cytoscape.task.destroy does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[79,33] package org.cytoscape.task.destroy does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[83,30] cannot find symbol symbol : class GroupNodesTaskFactory location: package org.cytoscape.task.edit [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[84,30] cannot find symbol symbol : class MapGlobalToLocalTableTaskFactory location: package org.cytoscape.task.edit [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[85,30] cannot find symbol symbol : class MapTableToNetworkTablesTaskFactory location: package org.cytoscape.task.edit [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[379,1] cannot find symbol symbol : class ApplyVisualStyleTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[386,1] cannot find symbol symbol : class MapGlobalToLocalTableTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[429,1] cannot find symbol symbol : class DeleteSelectedNodesAndEdgesTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[561,1] cannot find symbol symbol : class NewEmptyNetworkViewFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[567,1] cannot find symbol symbol : class NewNetworkSelectedNodesAndEdgesTaskFatory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[573,1] cannot find symbol symbol : class NewNetworkSelectedNodesOnlyTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[579,1] cannot find symbol symbol : class CloneNetworkTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[585,1] cannot find symbol symbol : class DestroyNetworkTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[591,1] cannot find symbol symbol : class DestroyNetworkViewTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[627,1] cannot find symbol symbol : class CreateNetworkViewTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[657,1] cannot find symbol symbol : class NewSessionTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[684,1] cannot find symbol symbol : class ApplyPreferredLayoutTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[690,1] cannot find symbol symbol : class DeleteColumnTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[708,1] cannot find symbol symbol : class DeleteTableTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[720,1] cannot find symbol symbol : class GroupNodesTaskFactory location: interface org.cytoscape.app.CyAppAdapter [ERROR] <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[750,1] cannot find symbol symbol : class MapTableToNetworkTablesTaskFactory location: interface org.cytoscape.app.CyAppAdapter [INFO] 32 errors [INFO] ------------------------------------------------------------- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/ws/trunk/pom.xml> to /opt/tomcat-home/jenkins/jobs/cytoscape-3-javadoc/modules/org.cytoscape$app-api/builds/2012-04-25_14-00-46/archive/org.cytoscape/app-api/3.0.0-alpha8-SNAPSHOT/app-api-3.0.0-alpha8-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 42.030s [INFO] Finished at: Wed Apr 25 14:01:32 GMT-05:00 2012 [INFO] Final Memory: 12M/29M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:compile (default-compile) on project app-api: Compilation failure cause : Compilation failure Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:compile (default-compile) on project app-api: Compilation failure at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:616) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) at java.util.concurrent.FutureTask.run(FutureTask.java:166) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) at java.lang.Thread.run(Thread.java:636) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:656) at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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