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[WARNING] ^
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:703:
 cannot find symbol
[WARNING] symbol  : class CollapseGroupTaskFactory
[WARNING] location: interface org.cytoscape.app.CyAppAdapter
[WARNING] CollapseGroupTaskFactory get_CollapseGroupTaskFactory();
[WARNING] ^
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:709:
 cannot find symbol
[WARNING] symbol  : class ExpandGroupTaskFactory
[WARNING] location: interface org.cytoscape.app.CyAppAdapter
[WARNING] ExpandGroupTaskFactory get_ExpandGroupTaskFactory();
[WARNING] ^
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:715:
 cannot find symbol
[WARNING] symbol  : class UnGroupNodesTaskFactory
[WARNING] location: interface org.cytoscape.app.CyAppAdapter
[WARNING] UnGroupNodesTaskFactory get_UnGroupNodesTaskFactory();
[WARNING] ^
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:39:
 package javax.help does not exist
[WARNING] import javax.help.HelpBroker;
[WARNING] ^
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:40:
 package javax.help does not exist
[WARNING] import javax.help.HelpSet;
[WARNING] ^
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:54:
 cannot find symbol
[WARNING] symbol  : class HelpBroker
[WARNING] location: interface org.cytoscape.application.swing.CyHelpBroker
[WARNING] public HelpBroker getHelpBroker();
[WARNING] ^
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/swing-application-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/application/swing/CyHelpBroker.java>:60:
 cannot find symbol
[WARNING] symbol  : class HelpSet
[WARNING] location: interface org.cytoscape.application.swing.CyHelpBroker
[WARNING] public HelpSet getHelpSet();
[WARNING] ^
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:703:
 warning - Tag @link: reference not found: CollapseGroupTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:709:
 warning - Tag @link: reference not found: ExpandGroupTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:715:
 warning - Tag @link: reference not found: UnGroupNodesTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:697:
 warning - Tag @link: reference not found: UnGroupTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:697:
 warning - Tag @link: reference not found: UnGroupTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:697:
 warning - Tag @link: reference not found: UnGroupTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:703:
 warning - Tag @link: reference not found: CollapseGroupTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:703:
 warning - Tag @link: reference not found: CollapseGroupTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:709:
 warning - Tag @link: reference not found: ExpandGroupTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:709:
 warning - Tag @link: reference not found: ExpandGroupTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:715:
 warning - Tag @link: reference not found: UnGroupNodesTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:715:
 warning - Tag @link: reference not found: UnGroupNodesTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:259:
 warning - Tag @link: reference not found: CyEdge
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:259:
 warning - Tag @link: reference not found: CyEdge
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:259:
 warning - Tag @link: reference not found: CyEdge
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:274:
 warning - Tag @link: reference not found: CyEdge
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:274:
 warning - Tag @link: reference not found: CyEdge
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:274:
 warning - Tag @link: reference not found: CyEdge
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:123:
 warning - @param argument "views" is not a parameter name.
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/session-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/session/CySession.java>:201:
 warning - Tag @link: reference not found: CyEdge
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/work-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/ContainsTunables.java>:37:
 warning - @Tunable is an unknown tag.
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/work-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/ContainsTunables.java>:37:
 warning - @ContainsTunable is an unknown tag.
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/work-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/ContainsTunables.java>:37:
 warning - @Tunable is an unknown tag.
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/work-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/work/TaskManager.java>:37:
 warning - @param argument "factory" is not a parameter name.
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CyPropertyReader.java>:22:
 warning - Tag @link: reference not found: 
org.cytoscape.property.session.Cysession
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CyPropertyReader.java>:32:
 warning - Tag @link: reference not found: 
org.cytoscape.property.session.Cysession
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19:
 warning - Tag @link: reference not found: 
org.cytoscape.property.session.Cysession
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19:
 warning - Tag @link: reference not found: 
org.cytoscape.property.session.Cysession
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19:
 warning - Tag @link: reference not found: 
org.cytoscape.property.session.Cysession
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/property-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/property/AbstractConfigDirPropsReader.java>:30:
 warning - Tag @link: reference not found: CyProperty.DEFAULT_PROPS_CONFIG_DIR
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/property-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/property/AbstractConfigDirPropsReader.java>:51:
 warning - Tag @link: reference not found: CyProperty.SavePolicy.CONFIG_DIR
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/property-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/property/AbstractConfigDirPropsReader.java>:51:
 warning - Tag @link: reference not found: 
CyProperty.SavePolicy.SESSION_FILE_AND_CONFIG_DIR
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/equations-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/equations/FunctionError.java>:36:
 warning - @CyAPI.Final.class is an unknown tag.
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19:
 warning - Tag @link: reference not found: 
org.cytoscape.property.session.Cysession
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19:
 warning - Tag @link: reference not found: 
org.cytoscape.property.session.Cysession
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19:
 warning - Tag @link: reference not found: 
org.cytoscape.property.session.Cysession
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/distro-javadoc-sources/io-api-3.0.0-alpha8-SNAPSHOT-sources/org/cytoscape/io/read/CySessionReader.java>:19:
 warning - Tag @link: reference not found: 
org.cytoscape.property.session.Cysession
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:703:
 warning - Tag @link: reference not found: CollapseGroupTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:709:
 warning - Tag @link: reference not found: ExpandGroupTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:715:
 warning - Tag @link: reference not found: UnGroupNodesTaskFactory
[WARNING] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:697:
 warning - Tag @link: reference not found: UnGroupTaskFactory
[JENKINS] Archiving  javadoc
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ app-api 
---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/resources>
[INFO] 
[INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ app-api ---
[INFO] Compiling 3 source files to 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[82,30]
 cannot find symbol
symbol  : class CollapseGroupTaskFactory
location: package org.cytoscape.task.edit
[ERROR] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[85,30]
 cannot find symbol
symbol  : class ExpandGroupTaskFactory
location: package org.cytoscape.task.edit
[ERROR] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[90,30]
 cannot find symbol
symbol  : class UnGroupNodesTaskFactory
location: package org.cytoscape.task.edit
[ERROR] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[91,30]
 cannot find symbol
symbol  : class UnGroupTaskFactory
location: package org.cytoscape.task.edit
[ERROR] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[697,1]
 cannot find symbol
symbol  : class UnGroupTaskFactory
location: interface org.cytoscape.app.CyAppAdapter
[ERROR] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[703,1]
 cannot find symbol
symbol  : class CollapseGroupTaskFactory
location: interface org.cytoscape.app.CyAppAdapter
[ERROR] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[709,1]
 cannot find symbol
symbol  : class ExpandGroupTaskFactory
location: interface org.cytoscape.app.CyAppAdapter
[ERROR] 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/src/main/java/org/cytoscape/app/CyAppAdapter.java>:[715,1]
 cannot find symbol
symbol  : class UnGroupNodesTaskFactory
location: interface org.cytoscape.app.CyAppAdapter
[INFO] 8 errors 
[INFO] -------------------------------------------------------------
[JENKINS] Archiving 
<http://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/org.cytoscape$app-api/ws/pom.xml>
 to 
/opt/tomcat-home/jenkins/jobs/cytoscape-3-javadoc/modules/org.cytoscape$app-api/builds/2012-04-26_15-00-44/archive/org.cytoscape/app-api/3.0.0-alpha8-SNAPSHOT/app-api-3.0.0-alpha8-SNAPSHOT.pom

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