Author: pwang Date: 2012-05-11 16:34:10 -0700 (Fri, 11 May 2012) New Revision: 29253
Added: core3/samples/trunk/sample23/pom.xml core3/samples/trunk/sample23/src/ core3/samples/trunk/sample23/src/main/ core3/samples/trunk/sample23/src/main/java/ core3/samples/trunk/sample23/src/main/java/org/ core3/samples/trunk/sample23/src/main/java/org/cytoscape/ core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/ core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/ core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/CyActivator.java core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/IXor.java core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/Sample23.java Log: Ported from 2.8 sample23 Added: core3/samples/trunk/sample23/pom.xml =================================================================== --- core3/samples/trunk/sample23/pom.xml (rev 0) +++ core3/samples/trunk/sample23/pom.xml 2012-05-11 23:34:10 UTC (rev 29253) @@ -0,0 +1,94 @@ +<project xmlns="http://maven.apache.org/POM/4.0.0"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd";> + <modelVersion>4.0.0</modelVersion> + + <properties> + <bundle.symbolicName>sample23</bundle.symbolicName> + <bundle.namespace>org.cytoscape.sample.internal</bundle.namespace> + <cytoscape.api.version>3.0.0-alpha8-SNAPSHOT</cytoscape.api.version> + + <maven-bundle-plugin.version>2.3.4</maven-bundle-plugin.version> + <osgi.api.version>4.2.0</osgi.api.version> + </properties> + + <groupId>org.cytoscape.sample</groupId> + <artifactId>sample23</artifactId> + <packaging>bundle</packaging> + <name>${bundle.symbolicName}</name> + + <version>3.0.0-alpha8-SNAPSHOT</version> + + <repositories> + <repository> + <id>cytoscape_snapshots</id> + <snapshots> + <enabled>true</enabled> + </snapshots> + <releases> + <enabled>false</enabled> + </releases> + <name>Cytoscape Snapshots</name> + <url>http://code.cytoscape.org/nexus/content/repositories/snapshots/</url> + </repository> + <repository> + <id>cytoscape_releases</id> + <snapshots> + <enabled>false</enabled> + </snapshots> + <releases> + <enabled>true</enabled> + </releases> + <name>Cytoscape Releases</name> + <url>http://code.cytoscape.org/nexus/content/repositories/releases/</url> + </repository> + </repositories> + + <build> + <plugins> + <plugin> + <groupId>org.apache.felix</groupId> + <artifactId>maven-bundle-plugin</artifactId> + <version>${maven-bundle-plugin.version}</version> + <extensions>true</extensions> + <configuration> + <instructions> + <Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName> + <Bundle-Version>${project.version}</Bundle-Version> + <Export-Package>!${bundle.namespace}.*</Export-Package> + <Private-Package>${bundle.namespace}.*</Private-Package> + <Bundle-Activator>${bundle.namespace}.CyActivator</Bundle-Activator> + </instructions> + </configuration> + </plugin> + </plugins> + </build> + + <dependencies> + <dependency> + <groupId>org.cytoscape</groupId> + <artifactId>core-task-api</artifactId> + <version>${cytoscape.api.version}</version> + </dependency> + <dependency> + <groupId>org.cytoscape</groupId> + <artifactId>equations-api</artifactId> + <version>${cytoscape.api.version}</version> + </dependency> + <dependency> + <groupId>org.cytoscape</groupId> + <artifactId>work-api</artifactId> + <version>${cytoscape.api.version}</version> + </dependency> + <dependency> + <groupId>org.cytoscape</groupId> + <artifactId>service-api</artifactId> + <version>${cytoscape.api.version}</version> + </dependency> + <dependency> + <groupId>org.osgi</groupId> + <artifactId>org.osgi.core</artifactId> + <version>${osgi.api.version}</version> + </dependency> + + </dependencies> + +</project> Added: core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/CyActivator.java =================================================================== --- core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/CyActivator.java (rev 0) +++ core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/CyActivator.java 2012-05-11 23:34:10 UTC (rev 29253) @@ -0,0 +1,36 @@ +package org.cytoscape.sample.internal; + +import org.osgi.framework.BundleContext; +import org.cytoscape.equations.EquationCompiler; +import org.cytoscape.equations.Interpreter; +import org.cytoscape.service.util.AbstractCyActivator; +import java.util.Properties; + + +public class CyActivator extends AbstractCyActivator { + public CyActivator() { + super(); + } + + + public void start(BundleContext bc) { + + + //MyNodeViewTaskFactory myNodeViewTaskFactory = new MyNodeViewTaskFactory(); + + +// Properties myNodeViewTaskFactoryProps = new Properties(); +// myNodeViewTaskFactoryProps.setProperty("title","Double node size"); + //registerService(bc,myNodeViewTaskFactory,NodeViewTaskFactory.class, myNodeViewTaskFactoryProps); + + // Get service reference + + EquationCompiler eqCompilerRef = getService(bc,EquationCompiler.class); + Interpreter interpreterRef = getService(bc,Interpreter.class); + + + Sample23 sample23 = new Sample23(eqCompilerRef, interpreterRef); + + } +} + Added: core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/IXor.java =================================================================== --- core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/IXor.java (rev 0) +++ core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/IXor.java 2012-05-11 23:34:10 UTC (rev 29253) @@ -0,0 +1,54 @@ +package org.cytoscape.sample.internal; + + +import org.cytoscape.equations.AbstractFunction; +import org.cytoscape.equations.ArgDescriptor; +import org.cytoscape.equations.ArgType; +import org.cytoscape.equations.FunctionUtil; + + +public class IXor extends AbstractFunction { + public IXor() { + super(new ArgDescriptor[] { + new ArgDescriptor(ArgType.INT, "arg1", "A quantity that can be converted to an integer."), + new ArgDescriptor(ArgType.INT, "arg2", "A quantity that can be converted to an integer."), + }); + } + + /** + * Used to parse the function string. This name is treated in a case-insensitive manner! + * @returns the name by which you must call the function when used in an attribute equation. + */ + public String getName() { return "IXOR"; } + + /** + * Used to provide help for users. + * @returns a description of what this function does + */ + public String getFunctionSummary() { return "Returns an integer value that is the exclusive-or of 2 other integer values."; } + + public Class getReturnType() { return Long.class; } + + /** + * @param args the function arguments which must be two objects of type Long + * @returns the result of the function evaluation which is the exclusive-or of the bits of the 2 arguments + */ + public Object evaluateFunction(final Object[] args) { + long arg1; + try { + arg1 = FunctionUtil.getArgAsLong(args[0]); + } catch (final Exception e) { + throw new IllegalArgumentException("IXOR: can't convert the 1st argument to an integer!"); + } + + long arg2; + try { + arg2 = FunctionUtil.getArgAsLong(args[0]); + } catch (final Exception e) { + throw new IllegalArgumentException("IXOR: can't convert the 2nd argument to an integer!"); + } + + final long result = arg1 ^ arg2; + return (Long)result; + } +} Added: core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/Sample23.java =================================================================== --- core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/Sample23.java (rev 0) +++ core3/samples/trunk/sample23/src/main/java/org/cytoscape/sample/internal/Sample23.java 2012-05-11 23:34:10 UTC (rev 29253) @@ -0,0 +1,14 @@ +package org.cytoscape.sample.internal; + +import org.cytoscape.equations.EquationCompiler; +import org.cytoscape.equations.Interpreter; +import org.cytoscape.equations.EquationParser; + + +public class Sample23 { + + public Sample23(EquationCompiler eqCompilerRef, Interpreter interpreterRef){ + final EquationParser theParser = eqCompilerRef.getParser(); + theParser.registerFunction(new IXor()); + } +} -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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