See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/922/>
------------------------------------------
[...truncated 22523 lines...]
[INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeDependencies done: 1017 ms
[INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeOrphanReviews...
[INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeOrphanReviews done: 7 ms
[INFO] Database optimization done: 30510 ms
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [39:11.814s]
[INFO] Cytoscape BioPAX Impl (biopax-impl) ............... SUCCESS [9.202s]
[INFO] Cytoscape Command Executor Impl (command-executor-impl) SUCCESS [4.079s]
[INFO] Cytoscape Equations Impl (equations-impl) ......... SUCCESS [5.986s]
[INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SKIPPED
[INFO] Cytoscape Model Impl (model-impl) ................. SUCCESS [10.233s]
[INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SKIPPED
[INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SUCCESS [7.098s]
[INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SKIPPED
[INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SUCCESS
[8:14.378s]
[INFO] Cytoscape Core Task Impl (core-task-impl) ......... SUCCESS [10.998s]
[INFO] Cytoscape CPath2 Impl (cpath2-impl) ............... SUCCESS [11.099s]
[INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SKIPPED
[INFO] Cytoscape IO Impl (io-impl) ....................... SUCCESS [19.491s]
[INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SKIPPED
[INFO] Cytoscape Event Impl (event-impl) ................. SUCCESS [10.370s]
[INFO] Cytoscape Layout Impl (layout-impl) ............... SUCCESS [6.143s]
[INFO] Cytoscape Ding View/Presentation Impl Performance
(ding-impl-performance-debug) SUCCESS [6.049s]
[INFO] Cytoscape Editor Impl (editor-impl) ............... SUCCESS [4.491s]
[INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS
[4.823s]
[INFO] Cytoscape Event Impl IT (event-impl-it) ........... SKIPPED
[INFO] Cytoscape Filters Impl (filter-impl) .............. SUCCESS [4.808s]
[INFO] Cytoscape GraphML Impl (graphml-impl) ............. SUCCESS [6.684s]
[INFO] Cytoscape Groups Impl (group-impl) ................ SUCCESS [5.137s]
[INFO] Cytoscape Group Data Impl (group-data-impl) ....... SUCCESS [3.631s]
[INFO] Cytoscape Group View Impl (group-view-impl) ....... SUCCESS [1.839s]
[INFO] Cytoscape IO Impl Performance (io-impl-performance) SUCCESS [3.638s]
[INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS
[4.402s]
[INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SUCCESS [1.532s]
[INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SUCCESS [2.334s]
[INFO] Cytoscape Linkout Impl (linkout-impl) ............. SUCCESS [1.758s]
[INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SUCCESS [5.165s]
[INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SUCCESS [5.489s]
[INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug)
SUCCESS [3.074s]
[INFO] Cytoscape Model Impl Table Performance Debug
(model-impl-table-performance-debug) SUCCESS [3.135s]
[INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SUCCESS [6.580s]
[INFO] Cytoscape Merge Impl (network-merge-impl) ......... SUCCESS [4.993s]
[INFO] Cytoscape App Impl (app-impl) ..................... SUCCESS [7.707s]
[INFO] Cytoscape Presentation Impl (presentation-impl) ... SUCCESS [3.608s]
[INFO] Cytoscape Property Impl (property-impl) ........... SUCCESS [3.357s]
[INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SKIPPED
[INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... SUCCESS [20.776s]
[INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SUCCESS
[6.863s]
[INFO] Cytoscape SBML Impl (sbml-impl) ................... SUCCESS [12.786s]
[INFO] Cytoscape Search Impl (search-impl) ............... SUCCESS [3.777s]
[INFO] Cytoscape Session Impl (session-impl) ............. SUCCESS [3.057s]
[INFO] Cytoscape Help Impl (help-impl) ................... SKIPPED
[INFO] Cytoscape Swing Application Impl (swing-application-impl) SUCCESS
[9.256s]
[INFO] Cytoscape Table Browser Impl (table-browser-impl) . FAILURE [1.017s]
[INFO] Cytoscape Table Import Impl (table-import-impl) ... FAILURE [1.341s]
[INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SUCCESS [7.767s]
[INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SKIPPED
[INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SUCCESS [11.260s]
[INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl)
SUCCESS [3.864s]
[INFO] Cytoscape Webservice Impl (webservice-impl) ....... SUCCESS [2.405s]
[INFO] Cytoscape NCBI Webservice Impl (webservice-ncbi-client-impl) SUCCESS
[4.523s]
[INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED
[INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SUCCESS [6.531s]
[INFO] Cytoscape Application Impl (application-impl) ..... SUCCESS [7.717s]
[INFO] Cytoscape PSIQUIC Webservice Impl (webservice-psicquic-client-impl)
SUCCESS [6.885s]
[INFO] Cytoscape Datasource Impl (datasource-impl) ....... SUCCESS [1.991s]
[INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SUCCESS
[3.038s]
[INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SUCCESS [3.435s]
[INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl)
SUCCESS [5.317s]
[INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SUCCESS [2.594s]
[INFO] Cytoscape Scripting Impl (scripting-impl) ......... SUCCESS [3.261s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 39:20.195s
[INFO] Finished at: Sat May 12 21:13:08 GMT-05:00 2012
[INFO] Final Memory: 57M/294M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal
org.codehaus.mojo:cobertura-maven-plugin:2.5:instrument (default-cli) on
project table-browser-impl: Unable to execute Cobertura. Error while executing
process. Cannot run program "/bin/sh": java.io.IOException: error=12, Cannot
allocate memory -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal
org.codehaus.mojo:cobertura-maven-plugin:2.5:instrument (default-cli) on
project table-browser-impl: Unable to execute Cobertura.
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at
org.apache.maven.lifecycle.internal.MojoExecutor.executeForkedExecutions(MojoExecutor.java:365)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:199)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
at
org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
at
org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:85)
at
org.sonar.maven3.Maven3PluginExecutor.concreteExecute(Maven3PluginExecutor.java:48)
at
org.sonar.batch.AbstractMavenPluginExecutor.execute(AbstractMavenPluginExecutor.java:52)
at
org.sonar.batch.AbstractMavenPluginExecutor.execute(AbstractMavenPluginExecutor.java:38)
at
org.sonar.batch.phases.InitializersExecutor.executeMavenPlugin(InitializersExecutor.java:73)
at
org.sonar.batch.phases.InitializersExecutor.execute(InitializersExecutor.java:60)
at org.sonar.batch.phases.Phases.execute(Phases.java:90)
at
org.sonar.batch.bootstrap.ProjectModule.doStart(ProjectModule.java:143)
at org.sonar.batch.bootstrap.Module.start(Module.java:89)
at org.sonar.batch.bootstrap.BatchModule.analyze(BatchModule.java:110)
at org.sonar.batch.bootstrap.BatchModule.analyze(BatchModule.java:105)
at org.sonar.batch.bootstrap.BatchModule.doStart(BatchModule.java:100)
at org.sonar.batch.bootstrap.Module.start(Module.java:89)
at
org.sonar.batch.bootstrap.BootstrapModule.doStart(BootstrapModule.java:96)
at org.sonar.batch.bootstrap.Module.start(Module.java:89)
at org.sonar.batch.Batch.execute(Batch.java:74)
at org.sonar.maven3.SonarMojo.executeBatch(SonarMojo.java:147)
at org.sonar.maven3.SonarMojo.execute(SonarMojo.java:136)
at org.codehaus.mojo.sonar.Bootstraper.executeMojo(Bootstraper.java:113)
at org.codehaus.mojo.sonar.Bootstraper.start(Bootstraper.java:65)
at org.codehaus.mojo.sonar.SonarMojo.execute(SonarMojo.java:90)
at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
at
org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
at
org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:141)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290)
at
org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230)
at
org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:409)
at
org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:352)
Caused by: org.apache.maven.plugin.MojoExecutionException: Unable to execute
Cobertura.
at
org.codehaus.mojo.cobertura.tasks.AbstractTask.executeJava(AbstractTask.java:244)
at
org.codehaus.mojo.cobertura.tasks.InstrumentTask.execute(InstrumentTask.java:131)
at
org.codehaus.mojo.cobertura.CoberturaInstrumentMojo.execute(CoberturaInstrumentMojo.java:145)
at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
... 52 more
Caused by: org.codehaus.plexus.util.cli.CommandLineException: Error while
executing process.
at
org.codehaus.plexus.util.cli.Commandline.execute(Commandline.java:656)
at
org.codehaus.plexus.util.cli.CommandLineUtils.executeCommandLine(CommandLineUtils.java:144)
at
org.codehaus.plexus.util.cli.CommandLineUtils.executeCommandLine(CommandLineUtils.java:107)
at
org.codehaus.mojo.cobertura.tasks.AbstractTask.executeJava(AbstractTask.java:240)
... 56 more
Caused by: java.io.IOException: Cannot run program "/bin/sh":
java.io.IOException: error=12, Cannot allocate memory
at java.lang.ProcessBuilder.start(ProcessBuilder.java:475)
at java.lang.Runtime.exec(Runtime.java:610)
at java.lang.Runtime.exec(Runtime.java:526)
at
org.codehaus.plexus.util.cli.Commandline.execute(Commandline.java:636)
... 59 more
Caused by: java.io.IOException: java.io.IOException: error=12, Cannot allocate
memory
at java.lang.UNIXProcess.<init>(UNIXProcess.java:164)
at java.lang.ProcessImpl.start(ProcessImpl.java:81)
at java.lang.ProcessBuilder.start(ProcessBuilder.java:468)
... 62 more
[ERROR] Failed to execute goal
org.codehaus.mojo:cobertura-maven-plugin:2.5:instrument (default-cli) on
project table-import-impl: Unable to execute Cobertura. Error while executing
process. Cannot run program "/bin/sh": java.io.IOException: error=12, Cannot
allocate memory -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal
org.codehaus.mojo:cobertura-maven-plugin:2.5:instrument (default-cli) on
project table-import-impl: Unable to execute Cobertura.
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at
org.apache.maven.lifecycle.internal.MojoExecutor.executeForkedExecutions(MojoExecutor.java:365)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:199)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
at
org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
at
org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:85)
at
org.sonar.maven3.Maven3PluginExecutor.concreteExecute(Maven3PluginExecutor.java:48)
at
org.sonar.batch.AbstractMavenPluginExecutor.execute(AbstractMavenPluginExecutor.java:52)
at
org.sonar.batch.AbstractMavenPluginExecutor.execute(AbstractMavenPluginExecutor.java:38)
at
org.sonar.batch.phases.InitializersExecutor.executeMavenPlugin(InitializersExecutor.java:73)
at
org.sonar.batch.phases.InitializersExecutor.execute(InitializersExecutor.java:60)
at org.sonar.batch.phases.Phases.execute(Phases.java:90)
at
org.sonar.batch.bootstrap.ProjectModule.doStart(ProjectModule.java:143)
at org.sonar.batch.bootstrap.Module.start(Module.java:89)
at org.sonar.batch.bootstrap.BatchModule.analyze(BatchModule.java:110)
at org.sonar.batch.bootstrap.BatchModule.analyze(BatchModule.java:105)
at org.sonar.batch.bootstrap.BatchModule.doStart(BatchModule.java:100)
at org.sonar.batch.bootstrap.Module.start(Module.java:89)
at
org.sonar.batch.bootstrap.BootstrapModule.doStart(BootstrapModule.java:96)
at org.sonar.batch.bootstrap.Module.start(Module.java:89)
at org.sonar.batch.Batch.execute(Batch.java:74)
at org.sonar.maven3.SonarMojo.executeBatch(SonarMojo.java:147)
at org.sonar.maven3.SonarMojo.execute(SonarMojo.java:136)
at org.codehaus.mojo.sonar.Bootstraper.executeMojo(Bootstraper.java:113)
at org.codehaus.mojo.sonar.Bootstraper.start(Bootstraper.java:65)
at org.codehaus.mojo.sonar.SonarMojo.execute(SonarMojo.java:90)
at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
at
org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
at
org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
at
org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:141)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290)
at
org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230)
at
org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:409)
at
org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:352)
Caused by: org.apache.maven.plugin.MojoExecutionException: Unable to execute
Cobertura.
at
org.codehaus.mojo.cobertura.tasks.AbstractTask.executeJava(AbstractTask.java:244)
at
org.codehaus.mojo.cobertura.tasks.InstrumentTask.execute(InstrumentTask.java:131)
at
org.codehaus.mojo.cobertura.CoberturaInstrumentMojo.execute(CoberturaInstrumentMojo.java:145)
at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
at
org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
... 52 more
Caused by: org.codehaus.plexus.util.cli.CommandLineException: Error while
executing process.
at
org.codehaus.plexus.util.cli.Commandline.execute(Commandline.java:656)
at
org.codehaus.plexus.util.cli.CommandLineUtils.executeCommandLine(CommandLineUtils.java:144)
at
org.codehaus.plexus.util.cli.CommandLineUtils.executeCommandLine(CommandLineUtils.java:107)
at
org.codehaus.mojo.cobertura.tasks.AbstractTask.executeJava(AbstractTask.java:240)
... 56 more
Caused by: java.io.IOException: Cannot run program "/bin/sh":
java.io.IOException: error=12, Cannot allocate memory
at java.lang.ProcessBuilder.start(ProcessBuilder.java:475)
at java.lang.Runtime.exec(Runtime.java:610)
at java.lang.Runtime.exec(Runtime.java:526)
at
org.codehaus.plexus.util.cli.Commandline.execute(Commandline.java:636)
... 59 more
Caused by: java.io.IOException: java.io.IOException: error=12, Cannot allocate
memory
at java.lang.UNIXProcess.<init>(UNIXProcess.java:164)
at java.lang.ProcessImpl.start(ProcessImpl.java:81)
at java.lang.ProcessBuilder.start(ProcessBuilder.java:468)
... 62 more
[ERROR]
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please
read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :table-browser-impl
Sonar analysis completed: FAILURE
Build step 'Sonar' changed build result to FAILURE
Build step 'Sonar' marked build as failure
--
You received this message because you are subscribed to the Google Groups
"cytoscape-cvs" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/cytoscape-cvs?hl=en.
