Author: jm
Date: 2012-05-14 09:02:22 -0700 (Mon, 14 May 2012)
New Revision: 29257
Modified:
core3/impl/trunk/io-impl/impl/src/main/java/org/cytoscape/io/internal/write/xgmml/XGMMLWriter.java
Log:
Fixes #968: Base network only gets serialized if it hasn't been deleted.
Modified:
core3/impl/trunk/io-impl/impl/src/main/java/org/cytoscape/io/internal/write/xgmml/XGMMLWriter.java
===================================================================
---
core3/impl/trunk/io-impl/impl/src/main/java/org/cytoscape/io/internal/write/xgmml/XGMMLWriter.java
2012-05-14 15:03:53 UTC (rev 29256)
+++
core3/impl/trunk/io-impl/impl/src/main/java/org/cytoscape/io/internal/write/xgmml/XGMMLWriter.java
2012-05-14 16:02:22 UTC (rev 29257)
@@ -1015,7 +1015,10 @@
List<CySubNetwork> subNetList = rootNet.getSubNetworkList();
Set<CySubNetwork> registeredSubNetSet = new
LinkedHashSet<CySubNetwork>();
- registeredSubNetSet.add(rootNet.getBaseNetwork()); // The base
network must be the first one!
+ CySubNetwork baseNetwork = rootNet.getBaseNetwork();
+ if (isRegistered(baseNetwork)) {
+ registeredSubNetSet.add(baseNetwork); // The base
network must be the first one!
+ }
for (CySubNetwork sn : subNetList) {
if (isRegistered(sn))
--
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