See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/1025/>
------------------------------------------ [...truncated 25276 lines...] [INFO] parsing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/scripting-impl/target/site/cobertura/coverage.xml> [INFO] Sensor CoberturaSensor done: 14 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 484 ms [INFO] Execute decorators... [INFO] ------------- Analyzing Cytoscape Implementation Parent Project POM [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Compare to previous analysis (2012-05-30) [INFO] Compare over 5 days (2012-05-26, analysis of 2012-05-24 20:34:38.0) [INFO] Compare over 30 days (2012-05-01, analysis of 2012-05-01 20:28:13.0) [INFO] Initializer FindbugsMavenInitializer... [INFO] Initializer FindbugsMavenInitializer done: 0 ms [INFO] Initializer MavenInitializer... [INFO] Java source version: 1.6 [INFO] Java target version: 1.6 [INFO] Source encoding: UTF-8 [INFO] Initializer MavenInitializer done: 0 ms [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 19 ms [INFO] Sensor SquidSensor... [INFO] Java Squid scan... [INFO] Java Squid scan done: 0 ms [INFO] Sensor SquidSensor done: 0 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/target/surefire-reports> [INFO] Sensor SurefireSensor done: 1 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 5 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 199 ms [INFO] Sensor ProfileEventsSensor... [INFO] Sensor ProfileEventsSensor done: 5 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 4 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 7 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 3 ms [INFO] Execute decorators... [INFO] ANALYSIS SUCCESSFUL, you can browse http://code.cytoscape.org/sonar [INFO] Executing post-job class org.sonar.plugins.dbcleaner.runner.PurgeRunner [INFO] Database optimization... [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeOrphanResources... [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeOrphanResources done: 65 ms [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeEntities... [INFO] Deleting files data before Thu May 31 09:16:34 GMT-05:00 2012 [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeEntities done: 15219 ms [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeRuleMeasures... [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeRuleMeasures done: 1621 ms [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeUnprocessed... [INFO] Deleting unprocessed data before Thu May 31 09:16:51 GMT-05:00 2012 [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeUnprocessed done: 110 ms [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeDeletedResources... [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeDeletedResources done: 130 ms [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeDeprecatedLast... [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeDeprecatedLast done: 35 ms [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeDisabledResources... [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeDisabledResources done: 64 ms [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeResourceRoles... [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeResourceRoles done: 20 ms [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeEventOrphans... [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeEventOrphans done: 10 ms [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgePropertyOrphans... [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgePropertyOrphans done: 17 ms [INFO] Purge org.sonar.plugins.dbcleaner.period.PeriodPurge... [INFO] There are no snapshots to purge [INFO] Purge org.sonar.plugins.dbcleaner.period.PeriodPurge done: 23 ms [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeDependencies... [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeDependencies done: 373 ms [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeOrphanReviews... [INFO] Purge org.sonar.plugins.dbcleaner.purges.PurgeOrphanReviews done: 1 ms [INFO] Database optimization done: 17701 ms [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [40:10.754s] [INFO] Cytoscape BioPAX Impl (biopax-impl) ............... SUCCESS [8.964s] [INFO] Cytoscape Command Executor Impl (command-executor-impl) SUCCESS [2.962s] [INFO] Cytoscape Equations Impl (equations-impl) ......... SUCCESS [6.822s] [INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SKIPPED [INFO] Cytoscape Model Impl (model-impl) ................. SUCCESS [13.436s] [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SKIPPED [INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SUCCESS [4.552s] [INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SKIPPED [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SUCCESS [7:46.481s] [INFO] Cytoscape Core Task Impl (core-task-impl) ......... SUCCESS [11.681s] [INFO] Cytoscape CPath2 Impl (cpath2-impl) ............... SUCCESS [10.228s] [INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SKIPPED [INFO] Cytoscape IO Impl (io-impl) ....................... SUCCESS [16.929s] [INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SKIPPED [INFO] Cytoscape Event Impl (event-impl) ................. SUCCESS [9.426s] [INFO] Cytoscape Layout Impl (layout-impl) ............... SUCCESS [9.961s] [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SUCCESS [7.925s] [INFO] Cytoscape Editor Impl (editor-impl) ............... SUCCESS [5.430s] [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS [6.369s] [INFO] Cytoscape Event Impl IT (event-impl-it) ........... SKIPPED [INFO] Cytoscape Filters Impl (filter-impl) .............. SUCCESS [6.722s] [INFO] Cytoscape GraphML Impl (graphml-impl) ............. SUCCESS [4.816s] [INFO] Cytoscape Groups Impl (group-impl) ................ SUCCESS [4.558s] [INFO] Cytoscape Group Data Impl (group-data-impl) ....... SUCCESS [3.701s] [INFO] Cytoscape Group View Impl (group-view-impl) ....... SUCCESS [4.676s] [INFO] Cytoscape IO Impl Performance (io-impl-performance) SUCCESS [3.516s] [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS [3.014s] [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SUCCESS [3.260s] [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SUCCESS [3.402s] [INFO] Cytoscape Linkout Impl (linkout-impl) ............. SUCCESS [2.395s] [INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SUCCESS [5.675s] [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SUCCESS [4.067s] [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SUCCESS [2.724s] [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SUCCESS [2.449s] [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SUCCESS [6.672s] [INFO] Cytoscape Merge Impl (network-merge-impl) ......... SUCCESS [4.613s] [INFO] Cytoscape App Impl (app-impl) ..................... SUCCESS [5.561s] [INFO] Cytoscape Presentation Impl (presentation-impl) ... SUCCESS [3.756s] [INFO] Cytoscape Property Impl (property-impl) ........... SUCCESS [3.470s] [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SKIPPED [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... SUCCESS [22.248s] [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SUCCESS [6.965s] [INFO] Cytoscape SBML Impl (sbml-impl) ................... SUCCESS [9.250s] [INFO] Cytoscape Search Impl (search-impl) ............... SUCCESS [3.469s] [INFO] Cytoscape Session Impl Parent (session-impl-parent) SKIPPED [INFO] Cytoscape Session Impl (session-impl) ............. FAILURE [3.078s] [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SKIPPED [INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SUCCESS [14.445s] [INFO] Cytoscape Application Impl (application-impl) ..... SUCCESS [5.571s] [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED [INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SUCCESS [4.437s] [INFO] org.cytoscape.work-impl ........................... SUCCESS [4.096s] [INFO] Cytoscape Session Impl Integration Test (session-impl-integration-test) SKIPPED [INFO] Cytoscape Help Impl (help-impl) ................... SKIPPED [INFO] Cytoscape Swing Application Impl (swing-application-impl) SUCCESS [15.986s] [INFO] Cytoscape Table Browser Impl (table-browser-impl) . SUCCESS [5.431s] [INFO] Cytoscape Table Import Impl (table-import-impl) ... SUCCESS [34.273s] [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SUCCESS [8.209s] [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) SUCCESS [2.570s] [INFO] Cytoscape Webservice Impl (webservice-impl) ....... SUCCESS [4.127s] [INFO] Cytoscape NCBI Webservice Impl (webservice-ncbi-client-impl) SUCCESS [4.414s] [INFO] org.cytoscape.work-headless-impl .................. SUCCESS [2.597s] [INFO] Cytoscape PSIQUIC Webservice Impl (webservice-psicquic-client-impl) SUCCESS [9.317s] [INFO] Cytoscape Datasource Impl (datasource-impl) ....... SUCCESS [1.543s] [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SUCCESS [2.752s] [INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SUCCESS [1.965s] [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SUCCESS [1.774s] [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SUCCESS [1.660s] [INFO] Cytoscape Scripting Impl (scripting-impl) ......... SUCCESS [2.112s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 40:19.365s [INFO] Finished at: Thu May 31 21:16:52 GMT-05:00 2012 [INFO] Final Memory: 61M/315M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12:test (default-test) on project session-impl: Error while executing forked tests.; nested exception is java.io.IOException: Cannot run program "/bin/sh" (in directory "<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/impl";)>: java.io.IOException: error=12, Cannot allocate memory -> [Help 1] org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12:test (default-test) on project session-impl: Error while executing forked tests.; nested exception is java.io.IOException: Cannot run program "/bin/sh" (in directory "<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/impl";)>: java.io.IOException: error=12, Cannot allocate memory at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.MojoExecutor.executeForkedExecutions(MojoExecutor.java:365) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:199) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:85) at org.sonar.maven3.Maven3PluginExecutor.concreteExecute(Maven3PluginExecutor.java:48) at org.sonar.batch.AbstractMavenPluginExecutor.execute(AbstractMavenPluginExecutor.java:52) at org.sonar.batch.AbstractMavenPluginExecutor.execute(AbstractMavenPluginExecutor.java:38) at org.sonar.batch.phases.InitializersExecutor.executeMavenPlugin(InitializersExecutor.java:73) at org.sonar.batch.phases.InitializersExecutor.execute(InitializersExecutor.java:60) at org.sonar.batch.phases.Phases.execute(Phases.java:90) at org.sonar.batch.bootstrap.ProjectModule.doStart(ProjectModule.java:143) at org.sonar.batch.bootstrap.Module.start(Module.java:89) at org.sonar.batch.bootstrap.BatchModule.analyze(BatchModule.java:110) at org.sonar.batch.bootstrap.BatchModule.analyze(BatchModule.java:105) at org.sonar.batch.bootstrap.BatchModule.analyze(BatchModule.java:105) at org.sonar.batch.bootstrap.BatchModule.doStart(BatchModule.java:100) at org.sonar.batch.bootstrap.Module.start(Module.java:89) at org.sonar.batch.bootstrap.BootstrapModule.doStart(BootstrapModule.java:96) at org.sonar.batch.bootstrap.Module.start(Module.java:89) at org.sonar.batch.Batch.execute(Batch.java:74) at org.sonar.maven3.SonarMojo.executeBatch(SonarMojo.java:147) at org.sonar.maven3.SonarMojo.execute(SonarMojo.java:136) at org.codehaus.mojo.sonar.Bootstraper.executeMojo(Bootstraper.java:113) at org.codehaus.mojo.sonar.Bootstraper.start(Bootstraper.java:65) at org.codehaus.mojo.sonar.SonarMojo.execute(SonarMojo.java:90) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537) at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196) at org.apache.maven.cli.MavenCli.main(MavenCli.java:141) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:616) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:409) at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:352) Caused by: org.apache.maven.plugin.MojoExecutionException: Error while executing forked tests.; nested exception is java.io.IOException: Cannot run program "/bin/sh" (in directory "<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/impl";)>: java.io.IOException: error=12, Cannot allocate memory at org.apache.maven.plugin.surefire.SurefirePlugin.assertNoException(SurefirePlugin.java:656) at org.apache.maven.plugin.surefire.SurefirePlugin.handleSummary(SurefirePlugin.java:645) at org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeAfterPreconditionsChecked(AbstractSurefireMojo.java:137) at org.apache.maven.plugin.surefire.AbstractSurefireMojo.execute(AbstractSurefireMojo.java:98) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 53 more Caused by: org.apache.maven.surefire.booter.SurefireBooterForkException: Error while executing forked tests.; nested exception is java.io.IOException: Cannot run program "/bin/sh" (in directory "<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/impl";)>: java.io.IOException: error=12, Cannot allocate memory at org.apache.maven.plugin.surefire.booterclient.ForkStarter.fork(ForkStarter.java:294) at org.apache.maven.plugin.surefire.booterclient.ForkStarter.run(ForkStarter.java:113) at org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeProvider(AbstractSurefireMojo.java:199) at org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeAllProviders(AbstractSurefireMojo.java:176) at org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeAfterPreconditionsChecked(AbstractSurefireMojo.java:135) ... 56 more Caused by: java.io.IOException: Cannot run program "/bin/sh" (in directory "<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/impl";)>: java.io.IOException: error=12, Cannot allocate memory at java.lang.ProcessBuilder.start(ProcessBuilder.java:475) at java.lang.Runtime.exec(Runtime.java:610) at org.codehaus.plexus.util.cli.Commandline.execute(Commandline.java:651) at org.codehaus.plexus.util.cli.CommandLineUtils.executeCommandLineAsCallable(CommandLineUtils.java:140) at org.codehaus.plexus.util.cli.CommandLineUtils.executeCommandLine(CommandLineUtils.java:111) at org.codehaus.plexus.util.cli.CommandLineUtils.executeCommandLine(CommandLineUtils.java:86) at org.apache.maven.plugin.surefire.booterclient.ForkStarter.fork(ForkStarter.java:276) ... 60 more Caused by: java.io.IOException: java.io.IOException: error=12, Cannot allocate memory at java.lang.UNIXProcess.<init>(UNIXProcess.java:164) at java.lang.ProcessImpl.start(ProcessImpl.java:81) at java.lang.ProcessBuilder.start(ProcessBuilder.java:468) ... 66 more [ERROR] [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :session-impl Sonar analysis completed: FAILURE Build step 'Sonar' changed build result to FAILURE Build step 'Sonar' marked build as failure -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
