See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/1029/changes>
Changes: [paperwing] #refs 1051 Search field now working, should work appropriately to unselect currently selected tags, app manager able to filter out non-3.0 compatible apps, but we don't have any on the app store right now [mes] added command-executor-api, updated the rest of the codebase to use it, and made various tweaks to headless-distribution [mes] added startlevels to bundles so that they would hopefully start in a more deterministic fashion ------------------------------------------ [...truncated 4170 lines...] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ biopax-impl --- [INFO] Compiling 28 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/target/classes> [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/src/test/resources> [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ biopax-impl --- [INFO] [INFO] --- maven-compiler-plugin:2.3.2:testCompile (default-testCompile) @ biopax-impl --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ biopax-impl --- [INFO] No tests to run. [INFO] Surefire report directory: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] --- maven-bundle-plugin:2.3.4:bundle (default-bundle) @ biopax-impl --- [WARNING] Warning building bundle org.cytoscape:biopax-impl:bundle:3.0.0-alpha9-SNAPSHOT : Instructions in Export-Package that are never used: org\.cytoscape\.biopax\..*|org\.cytoscape\.biopax Classpath: Jar:.,Jar:io-api,Jar:session-api,Jar:vizmap-api,Jar:presentation-api,Jar:model-api,Jar:event-api,Jar:work-api,Jar:core-task-api,Jar:application-api,Jar:swing-application-api,Jar:work-swing-api,Jar:viewmodel-api,Jar:swing-util-api,Jar:property-api,Jar:paxtools-core,Jar:collections-generic,Jar:commons-lang,Jar:commons-logging,Jar:biopax-converter,Jar:woodstox-core-lgpl,Jar:pax-logging-api,Jar:org.osgi.core,Jar:service-api [WARNING] Warning building bundle org.cytoscape:biopax-impl:bundle:3.0.0-alpha9-SNAPSHOT : Superfluous export-package instructions: [org.cytoscape.biopax.*] ignoring exception during new ExecutedMojo null [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (attach-sources) @ biopax-impl --- [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org/cytoscape/biopax already added, skipping [INFO] org/cytoscape/biopax/internal already added, skipping [INFO] org/cytoscape/biopax/internal/view already added, skipping [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/target/biopax-impl-3.0.0-alpha9-SNAPSHOT-sources.jar> [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org/cytoscape/biopax already added, skipping [INFO] org/cytoscape/biopax/internal already added, skipping [INFO] org/cytoscape/biopax/internal/view already added, skipping [INFO] [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ biopax-impl --- [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/target/biopax-impl-3.0.0-alpha9-SNAPSHOT.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-SNAPSHOT.jar [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/pom.xml> to /opt/tomcat-home/.m2/repository/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-SNAPSHOT.pom [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/target/biopax-impl-3.0.0-alpha9-SNAPSHOT-sources.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-bundle-plugin:2.3.4:install (default-install) @ biopax-impl --- [INFO] Installing org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ biopax-impl --- Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml (1 KB at 4.0 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-20120601.230442-121.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-20120601.230442-121.jar (658 KB at 2015.6 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-20120601.230442-121.pom Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-20120601.230442-121.pom (4 KB at 41.9 KB/sec) Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/maven-metadata.xml Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/maven-metadata.xml (443 B at 7.5 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml (1 KB at 4.6 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/maven-metadata.xml (443 B at 3.2 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-20120601.230442-121-sources.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-20120601.230442-121-sources.jar (156 KB at 1159.6 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml (1 KB at 9.0 KB/sec) [INFO] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [INFO] --- maven-bundle-plugin:2.3.4:deploy (default-deploy) @ biopax-impl --- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$biopax-impl/builds/2012-06-01_18-04-00/archive/org.cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/target/biopax-impl-3.0.0-alpha9-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$biopax-impl/builds/2012-06-01_18-04-00/archive/org.cytoscape/biopax-impl/3.0.0-alpha9-20120601.230442-121/biopax-impl-3.0.0-alpha9-20120601.230442-121.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/biopax-impl/target/biopax-impl-3.0.0-alpha9-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$biopax-impl/builds/2012-06-01_18-04-00/archive/org.cytoscape/biopax-impl/3.0.0-alpha9-20120601.230442-121/biopax-impl-3.0.0-alpha9-20120601.230442-121-sources.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Command Executor Impl (command-executor-impl) 3.0.0-alpha9-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/spring-osgi/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/biopax-snapshot/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/spring-osgi-external/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/maven-metadata.xml Downloading: http://maven.itextpdf.com/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/zodiac-release/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/zodiac-milestone/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/maven-metadata.xml Downloading: http://www.ebi.ac.uk/~maven/m2repo_snapshots/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.pom Downloading: http://code.cytoscape.org/nexus/content/repositories/biopax-snapshot/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.pom Downloading: http://code.cytoscape.org/nexus/content/repositories/spring-osgi/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.pom Downloading: http://code.cytoscape.org/nexus/content/repositories/spring-osgi-external/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.pom Downloading: http://maven.itextpdf.com/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.pom Downloading: http://code.cytoscape.org/nexus/content/repositories/zodiac-release/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.pom Downloading: http://code.cytoscape.org/nexus/content/repositories/zodiac-milestone/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.pom Downloading: http://www.ebi.ac.uk/~maven/m2repo_snapshots/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.pom [WARNING] The POM for org.cytoscape:command-executor-api:jar:3.0.0-beta2-SNAPSHOT is missing, no dependency information available Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/biopax-snapshot/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/spring-osgi/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/spring-osgi-external/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.jar Downloading: http://maven.itextpdf.com/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/zodiac-release/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/zodiac-milestone/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.jar Downloading: http://www.ebi.ac.uk/~maven/m2repo_snapshots/org/cytoscape/command-executor-api/3.0.0-beta2-SNAPSHOT/command-executor-api-3.0.0-beta2-SNAPSHOT.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/command-executor-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$command-executor-impl/builds/2012-06-01_18-04-00/archive/org.cytoscape/command-executor-impl/3.0.0-alpha9-SNAPSHOT/command-executor-impl-3.0.0-alpha9-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [10.080s] [INFO] Cytoscape BioPAX Impl (biopax-impl) ............... SUCCESS [19.896s] [INFO] Cytoscape Command Executor Impl (command-executor-impl) FAILURE [3.706s] [INFO] Cytoscape Equations Impl (equations-impl) ......... SKIPPED [INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SKIPPED [INFO] Cytoscape Model Impl (model-impl) ................. SKIPPED [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SKIPPED [INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SKIPPED [INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SKIPPED [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SKIPPED [INFO] Cytoscape Core Task Impl (core-task-impl) ......... SKIPPED [INFO] Cytoscape CPath2 Impl (cpath2-impl) ............... SKIPPED [INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SKIPPED [INFO] Cytoscape IO Impl (io-impl) ....................... SKIPPED [INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SKIPPED [INFO] Cytoscape Event Impl (event-impl) ................. SKIPPED [INFO] Cytoscape Layout Impl (layout-impl) ............... SKIPPED [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SKIPPED [INFO] Cytoscape Editor Impl (editor-impl) ............... SKIPPED [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SKIPPED [INFO] Cytoscape Event Impl IT (event-impl-it) ........... SKIPPED [INFO] Cytoscape Filters Impl (filter-impl) .............. SKIPPED [INFO] Cytoscape GraphML Impl (graphml-impl) ............. SKIPPED [INFO] Cytoscape Groups Impl (group-impl) ................ SKIPPED [INFO] Cytoscape Group Data Impl (group-data-impl) ....... SKIPPED [INFO] Cytoscape Group View Impl (group-view-impl) ....... SKIPPED [INFO] Cytoscape IO Impl Performance (io-impl-performance) SKIPPED [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SKIPPED [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SKIPPED [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SKIPPED [INFO] Cytoscape Linkout Impl (linkout-impl) ............. SKIPPED [INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SKIPPED [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SKIPPED [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SKIPPED [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SKIPPED [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SKIPPED [INFO] Cytoscape Merge Impl (network-merge-impl) ......... SKIPPED [INFO] Cytoscape App Impl (app-impl) ..................... SKIPPED [INFO] Cytoscape Presentation Impl (presentation-impl) ... SKIPPED [INFO] Cytoscape Property Impl (property-impl) ........... SKIPPED [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SKIPPED [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... SKIPPED [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SKIPPED [INFO] Cytoscape SBML Impl (sbml-impl) ................... SKIPPED [INFO] Cytoscape Search Impl (search-impl) ............... SKIPPED [INFO] Cytoscape Session Impl Parent (session-impl-parent) SKIPPED [INFO] Cytoscape Session Impl (session-impl) ............. SKIPPED [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SKIPPED [INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SKIPPED [INFO] Cytoscape Application Impl (application-impl) ..... SKIPPED [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED [INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SKIPPED [INFO] org.cytoscape.work-impl ........................... SKIPPED [INFO] Cytoscape Session Impl Integration Test (session-impl-integration-test) SKIPPED [INFO] Cytoscape Help Impl (help-impl) ................... SKIPPED [INFO] Cytoscape Swing Application Impl (swing-application-impl) SKIPPED [INFO] Cytoscape Table Browser Impl (table-browser-impl) . SKIPPED [INFO] Cytoscape Table Import Impl (table-import-impl) ... SKIPPED [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SKIPPED [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) SKIPPED [INFO] Cytoscape Webservice Impl (webservice-impl) ....... SKIPPED [INFO] Cytoscape NCBI Webservice Impl (webservice-ncbi-client-impl) SKIPPED [INFO] org.cytoscape.work-headless-impl .................. SKIPPED [INFO] Cytoscape PSIQUIC Webservice Impl (webservice-psicquic-client-impl) SKIPPED [INFO] Cytoscape Datasource Impl (datasource-impl) ....... SKIPPED [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SKIPPED [INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SKIPPED [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SKIPPED [INFO] Cytoscape Scripting Impl (scripting-impl) ......... SKIPPED [INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 40.219s [INFO] Finished at: Fri Jun 01 18:04:48 GMT-05:00 2012 [INFO] Final Memory: 19M/49M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal on project command-executor-impl: Could not resolve dependencies for project org.cytoscape:command-executor-impl:bundle:3.0.0-alpha9-SNAPSHOT: Could not find artifact org.cytoscape:command-executor-api:jar:3.0.0-beta2-SNAPSHOT in cytoscape_snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots/) cause : Could not resolve dependencies for project org.cytoscape:command-executor-impl:bundle:3.0.0-alpha9-SNAPSHOT: Could not find artifact org.cytoscape:command-executor-api:jar:3.0.0-beta2-SNAPSHOT in cytoscape_snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots/) Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal on project command-executor-impl: Could not resolve dependencies for project org.cytoscape:command-executor-impl:bundle:3.0.0-alpha9-SNAPSHOT: Could not find artifact org.cytoscape:command-executor-api:jar:3.0.0-beta2-SNAPSHOT in cytoscape_snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots/) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies(LifecycleDependencyResolver.java:196) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.resolveProjectDependencies(LifecycleDependencyResolver.java:108) at org.apache.maven.lifecycle.internal.MojoExecutor.ensureDependenciesAreResolved(MojoExecutor.java:258) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:201) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:616) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) at java.util.concurrent.FutureTask.run(FutureTask.java:166) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) at java.lang.Thread.run(Thread.java:636) Caused by: org.apache.maven.project.DependencyResolutionException: Could not resolve dependencies for project org.cytoscape:command-executor-impl:bundle:3.0.0-alpha9-SNAPSHOT: Could not find artifact org.cytoscape:command-executor-api:jar:3.0.0-beta2-SNAPSHOT in cytoscape_snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots/) at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve(DefaultProjectDependenciesResolver.java:170) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies(LifecycleDependencyResolver.java:171) ... 30 more Caused by: org.sonatype.aether.resolution.DependencyResolutionException: Could not find artifact org.cytoscape:command-executor-api:jar:3.0.0-beta2-SNAPSHOT in cytoscape_snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots/) at org.sonatype.aether.impl.internal.DefaultRepositorySystem.resolveDependencies(DefaultRepositorySystem.java:412) at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve(DefaultProjectDependenciesResolver.java:164) ... 31 more Caused by: org.sonatype.aether.resolution.ArtifactResolutionException: Could not find artifact org.cytoscape:command-executor-api:jar:3.0.0-beta2-SNAPSHOT in cytoscape_snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots/) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:541) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:220) at org.sonatype.aether.impl.internal.DefaultRepositorySystem.resolveDependencies(DefaultRepositorySystem.java:395) ... 32 more Caused by: org.sonatype.aether.transfer.ArtifactNotFoundException: Could not find artifact org.cytoscape:command-executor-api:jar:3.0.0-beta2-SNAPSHOT in cytoscape_snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots/) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:945) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:940) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:695) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:689) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector.get(WagonRepositoryConnector.java:445) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:460) ... 34 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to bad build status FAILURE -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
