Author: pwang
Date: 2012-06-05 16:51:24 -0700 (Tue, 05 Jun 2012)
New Revision: 29474
Modified:
csplugins/trunk/ucsd/pwang/jActiveModules-impl/src/main/java/csplugins/jActiveModules/ActivePaths.java
Log:
Load VisualStyles
Modified:
csplugins/trunk/ucsd/pwang/jActiveModules-impl/src/main/java/csplugins/jActiveModules/ActivePaths.java
===================================================================
---
csplugins/trunk/ucsd/pwang/jActiveModules-impl/src/main/java/csplugins/jActiveModules/ActivePaths.java
2012-06-05 23:49:03 UTC (rev 29473)
+++
csplugins/trunk/ucsd/pwang/jActiveModules-impl/src/main/java/csplugins/jActiveModules/ActivePaths.java
2012-06-05 23:51:24 UTC (rev 29474)
@@ -33,6 +33,8 @@
import csplugins.jActiveModules.data.ActivePathFinderParameters;
//import csplugins.jActiveModules.util.Scaler;
import csplugins.jActiveModules.util.ScalerFactory;
+import csplugins.jActiveModules.util.Util;
+
import org.cytoscape.model.CyEdge;
import org.cytoscape.model.CyNetwork;
import org.cytoscape.model.CyTable;
@@ -50,6 +52,9 @@
import org.cytoscape.work.TaskMonitor;
import csplugins.jActiveModules.ServicesUtil;
import java.io.File;
+import java.io.IOException;
+import java.io.BufferedReader;
+import java.io.InputStreamReader;
//-----------------------------------------------------------------------------------
@@ -95,38 +100,30 @@
private static final String NODE_SCORE = MODULE_FINDER_PREFIX +
"activepathScore";
-// static {
-//
-// // Create visualStyles based on the definition in property files
-// //Cytoscape.firePropertyChange(Cytoscape.VIZMAP_LOADED, null,
vizmapPropsLocation);
-// //overviewVS =
Cytoscape.getVisualMappingManager().getCalculatorCatalog().getVisualStyle(VS_OVERVIEW_NAME);
-// //moduleVS =
Cytoscape.getVisualMappingManager().getCalculatorCatalog().getVisualStyle(VS_MODULE_NAME);
-//
-//
-// System.out.println("\n\nvizmapPropsLocation
="+vizmapPropsLocation+ "\n");
-// System.out.println("\n\nvizmapPropsLocation.getFile()
="+vizmapPropsLocation.getFile()+ "\n");
-//
-//
-// Iterator<VisualStyle> it =
ServicesUtil.visualMappingManagerRef.getAllVisualStyles().iterator();
-// while (it.hasNext()){
-// VisualStyle vs = it.next();
-// if (vs.getTitle().equalsIgnoreCase(VS_OVERVIEW_NAME)){
-// overviewVS = vs;
-// }
-// if (vs.getTitle().equalsIgnoreCase(VS_MODULE_NAME)){
-// moduleVS = vs;
-// }
-// }
-// if (overviewVS == null && moduleVS == null){
-// String filename = vizmapPropsLocation.getFile();
-// File f = new File(filename);
-//
-// System.out.println("f.getAbsolutePath()
="+f.getAbsolutePath() + "\tf.length = "+f.length()+ "\n");
-//
-// ServicesUtil.loadVizmapFileTaskFactory.loadStyles(f);
-// }
-// }
+ static {
+ if (overviewVS == null && moduleVS == null){
+ // Create visualStyles based on the definition in
property files
+ File f =
Util.getFileFromFar("jActiveModules_VS.props");
+ ServicesUtil.loadVizmapFileTaskFactory.loadStyles(f);
+ }
+ populateVS();
+ }
+ private static void populateVS(){
+
+ Iterator<VisualStyle> it =
ServicesUtil.visualMappingManagerRef.getAllVisualStyles().iterator();
+ while (it.hasNext()){
+ VisualStyle vs = it.next();
+ if (vs.getTitle().equalsIgnoreCase(VS_OVERVIEW_NAME)){
+ overviewVS = vs;
+ }
+ if (vs.getTitle().equalsIgnoreCase(VS_MODULE_NAME)){
+ moduleVS = vs;
+ }
+ }
+ }
+
+
private static boolean eventFired = false;
private static CyLayoutAlgorithm layoutAlgorithm =
ServicesUtil.cyLayoutsServiceRef.getLayout("force-directed");
@@ -284,15 +281,12 @@
ServicesUtil.cyNetworkViewManagerServiceRef.addNetworkView(newView);
// Apply layout for overview
-// layoutAlgorithm.setNetworkView(newView);
-//
this.insertTasksAfterCurrentTask(layoutAlgorithm.getTaskIterator());
Object context = layoutAlgorithm.getDefaultLayoutContext();
insertTasksAfterCurrentTask(layoutAlgorithm.createTaskIterator(newView,
context, CyLayoutAlgorithm.ALL_NODE_VIEWS,""));
+
+ ServicesUtil.visualMappingManagerRef.setVisualStyle(overviewVS,
newView);
+ newView.updateView();
-
-// this.visualMappingManager.setVisualStyle(overviewVS, newView);
-// newView.updateView();
-
taskMonitor.setStatusMessage("Create views for top n
modules...");
// Create view for top n modules
@@ -312,12 +306,10 @@
CyNetworkView theView =
ServicesUtil.cyNetworkViewFactoryServiceRef.createNetworkView(subnetworks[i]);
ServicesUtil.cyNetworkViewManagerServiceRef.addNetworkView(theView);
-// layoutAlgorithm.setNetworkView(theView);
-//
this.insertTasksAfterCurrentTask(layoutAlgorithm.getTaskIterator());
insertTasksAfterCurrentTask(layoutAlgorithm.createTaskIterator(theView,
context, CyLayoutAlgorithm.ALL_NODE_VIEWS,""));
-//
this.visualMappingManager.setVisualStyle(moduleVS, theView);
-// theView.updateView();
+
ServicesUtil.visualMappingManagerRef.setVisualStyle(moduleVS, theView);
+ theView.updateView();
}
taskMonitor.setProgress(1.0);
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