See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/1095/changes>
Changes: [mes] Removed use of colt in favor of parallel colt. This is important because colt uses a library that is only free for non-commercial use, which could become a problem for many users. ------------------------------------------ [...truncated 14346 lines...] [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ work-swing-impl --- Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml (2 KB at 21.8 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/work-swing-impl-3.0.0-alpha9-20120611.184317-172.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/work-swing-impl-3.0.0-alpha9-20120611.184317-172.jar (111 KB at 1431.5 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/work-swing-impl-3.0.0-alpha9-20120611.184317-172.pom Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/work-swing-impl-3.0.0-alpha9-20120611.184317-172.pom (2 KB at 27.0 KB/sec) Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/maven-metadata.xml Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/maven-metadata.xml (447 B at 17.5 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml (2 KB at 21.8 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/maven-metadata.xml (447 B at 17.5 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/work-swing-impl-3.0.0-alpha9-20120611.184317-172-sources.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/work-swing-impl-3.0.0-alpha9-20120611.184317-172-sources.jar (63 KB at 1100.9 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml (2 KB at 29.5 KB/sec) [INFO] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [INFO] --- maven-bundle-plugin:2.3.4:deploy (default-deploy) @ work-swing-impl --- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/work-swing-impl/impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$work-swing-impl/builds/2012-06-11_13-31-48/archive/org.cytoscape/work-swing-impl/3.0.0-alpha9-SNAPSHOT/work-swing-impl-3.0.0-alpha9-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/work-swing-impl/impl/target/work-swing-impl-3.0.0-alpha9-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$work-swing-impl/builds/2012-06-11_13-31-48/archive/org.cytoscape/work-swing-impl/3.0.0-alpha9-20120611.184317-172/work-swing-impl-3.0.0-alpha9-20120611.184317-172.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/work-swing-impl/impl/target/work-swing-impl-3.0.0-alpha9-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$work-swing-impl/builds/2012-06-11_13-31-48/archive/org.cytoscape/work-swing-impl/3.0.0-alpha9-20120611.184317-172/work-swing-impl-3.0.0-alpha9-20120611.184317-172-sources.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Session Impl Integration Test (session-impl-integration-test) 3.0.0-alpha9-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/integration-test/src/main/resources> [INFO] --- maven-resources-plugin:2.4.3:resources (default-resources) @ session-impl-integration-test --- [INFO] [INFO] No sources to compile [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ session-impl-integration-test --- [INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] --- maven-resources-plugin:2.4.3:testResources (default-testResources) @ session-impl-integration-test --- [INFO] [INFO] Compiling 7 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/integration-test/target/test-classes> [INFO] --- maven-compiler-plugin:2.3.2:testCompile (default-testCompile) @ session-impl-integration-test --- [INFO] [INFO] Surefire report directory: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/integration-test/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ session-impl-integration-test --- Running org.cytoscape.session.Cy263SimpleSessionLodingTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.507 sec Running org.cytoscape.session.Cy270SimpleSessionLodingTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.937 sec Running org.cytoscape.session.Cy3SimpleSessionLodingTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.82 sec Running org.cytoscape.session.Cy3LargeSessionLodingTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.868 sec Running org.cytoscape.session.Cy283ComplexSessionLodingTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.864 sec Running org.cytoscape.session.Cy252SimpleSessionLodingTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.448 sec Results : Tests run: 6, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] --- maven-jar-plugin:2.3.1:jar (default-jar) @ session-impl-integration-test --- [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/integration-test/target/session-impl-integration-test-3.0.0-alpha9-SNAPSHOT.jar> ignoring exception during new ExecutedMojo null [INFO] [INFO] No sources in project. Archive not created. [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/integration-test/target/session-impl-integration-test-3.0.0-alpha9-SNAPSHOT.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/session-impl-integration-test/3.0.0-alpha9-SNAPSHOT/session-impl-integration-test-3.0.0-alpha9-SNAPSHOT.jar [INFO] --- maven-source-plugin:2.1.2:jar (attach-sources) @ session-impl-integration-test --- [INFO] [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ session-impl-integration-test --- [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/integration-test/pom.xml> to /opt/tomcat-home/.m2/repository/org/cytoscape/session-impl-integration-test/3.0.0-alpha9-SNAPSHOT/session-impl-integration-test-3.0.0-alpha9-SNAPSHOT.pom [INFO] Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml [INFO] --- maven-deploy-plugin:2.5:deploy (default-deploy) @ session-impl-integration-test --- Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml (819 B at 1.5 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/3.0.0-alpha9-SNAPSHOT/session-impl-integration-test-3.0.0-alpha9-20120611.184405-138.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/3.0.0-alpha9-SNAPSHOT/session-impl-integration-test-3.0.0-alpha9-20120611.184405-138.jar (3 KB at 2.0 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/3.0.0-alpha9-SNAPSHOT/session-impl-integration-test-3.0.0-alpha9-20120611.184405-138.pom Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/3.0.0-alpha9-SNAPSHOT/session-impl-integration-test-3.0.0-alpha9-20120611.184405-138.pom (7 KB at 94.1 KB/sec) Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/maven-metadata.xml Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/maven-metadata.xml (309 B at 5.1 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml (819 B at 14.5 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl-integration-test/maven-metadata.xml (309 B at 6.6 KB/sec) [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/integration-test/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$session-impl-integration-test/builds/2012-06-11_13-31-48/archive/org.cytoscape/session-impl-integration-test/3.0.0-alpha9-SNAPSHOT/session-impl-integration-test-3.0.0-alpha9-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/session-impl/integration-test/target/session-impl-integration-test-3.0.0-alpha9-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$session-impl-integration-test/builds/2012-06-11_13-31-48/archive/org.cytoscape/session-impl-integration-test/3.0.0-alpha9-20120611.184405-138/session-impl-integration-test-3.0.0-alpha9-20120611.184405-138.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Help Impl (help-impl) 3.0.0-alpha9-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- docbkx-maven-plugin:2.0.9:generate-javahelp (default) @ help-impl --- [WARNING] Failed to find catalog files. [INFO] Processing manual.xml Error Failure reading <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/help-impl/src/docbkx/manual.xml>: http://www.docbook.org/xml/4.4/docbookx.dtd [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/help-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$help-impl/builds/2012-06-11_13-31-48/archive/org.cytoscape/help-impl/3.0.0-alpha9-SNAPSHOT/help-impl-3.0.0-alpha9-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [3.954s] [INFO] Cytoscape BioPAX Impl (biopax-impl) ............... SUCCESS [7.772s] [INFO] Cytoscape Command Executor Impl (command-executor-impl) SUCCESS [5.082s] [INFO] Cytoscape Equations Impl (equations-impl) ......... SUCCESS [8.157s] [INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SUCCESS [0.316s] [INFO] Cytoscape Model Impl (model-impl) ................. SUCCESS [9.016s] [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SUCCESS [0.470s] [INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SUCCESS [5.194s] [INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SUCCESS [0.412s] [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SUCCESS [4:21.004s] [INFO] org.cytoscape.work-impl ........................... SUCCESS [3.947s] [INFO] Cytoscape Core Task Impl (core-task-impl) ......... SUCCESS [10.112s] [INFO] Cytoscape CPath2 Impl (cpath2-impl) ............... SUCCESS [12.013s] [INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SUCCESS [0.488s] [INFO] Cytoscape IO Impl (io-impl) ....................... SUCCESS [18.636s] [INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SUCCESS [0.301s] [INFO] Cytoscape Event Impl (event-impl) ................. SUCCESS [13.337s] [INFO] Cytoscape Layout Impl (layout-impl) ............... SUCCESS [7.166s] [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SUCCESS [26.424s] [INFO] Cytoscape Editor Impl (editor-impl) ............... SUCCESS [4.225s] [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS [5.243s] [INFO] Cytoscape Event Impl IT (event-impl-it) ........... SUCCESS [6.059s] [INFO] Cytoscape Filters Impl (filter-impl) .............. SUCCESS [5.834s] [INFO] Cytoscape GraphML Impl (graphml-impl) ............. SUCCESS [6.582s] [INFO] Cytoscape Groups Impl (group-impl) ................ SUCCESS [5.786s] [INFO] Cytoscape Group Data Impl (group-data-impl) ....... SUCCESS [3.122s] [INFO] Cytoscape Group View Impl (group-view-impl) ....... SUCCESS [3.806s] [INFO] Cytoscape IO Impl Performance (io-impl-performance) SUCCESS [20.217s] [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS [5.774s] [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SUCCESS [3.903s] [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SUCCESS [5.088s] [INFO] Cytoscape Linkout Impl (linkout-impl) ............. SUCCESS [4.288s] [INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SUCCESS [7.325s] [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SUCCESS [5.248s] [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SUCCESS [9.849s] [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SUCCESS [11.299s] [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SUCCESS [7.585s] [INFO] Cytoscape Merge Impl (network-merge-impl) ......... SUCCESS [6.767s] [INFO] Cytoscape App Impl (app-impl) ..................... SUCCESS [6.852s] [INFO] Cytoscape Presentation Impl (presentation-impl) ... SUCCESS [6.865s] [INFO] Cytoscape Property Impl (property-impl) ........... SUCCESS [6.785s] [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SUCCESS [0.407s] [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... SUCCESS [18.532s] [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SUCCESS [41.657s] [INFO] Cytoscape SBML Impl (sbml-impl) ................... SUCCESS [8.513s] [INFO] Cytoscape Search Impl (search-impl) ............... SUCCESS [5.777s] [INFO] Cytoscape Session Impl Parent (session-impl-parent) SUCCESS [0.492s] [INFO] Cytoscape Session Impl (session-impl) ............. SUCCESS [4.483s] [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SUCCESS [0.263s] [INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SUCCESS [9.030s] [INFO] Cytoscape Application Impl (application-impl) ..... SUCCESS [7.317s] [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SUCCESS [0.366s] [INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SUCCESS [6.640s] [INFO] Cytoscape Session Impl Integration Test (session-impl-integration-test) SUCCESS [48.886s] [INFO] Cytoscape Help Impl (help-impl) ................... FAILURE [4.419s] [INFO] Cytoscape Swing Utility Impl (swing-util-impl) .... SKIPPED [INFO] Cytoscape Swing Application Impl (swing-application-impl) SKIPPED [INFO] Cytoscape Table Browser Impl (table-browser-impl) . SKIPPED [INFO] Cytoscape Table Import Impl (table-import-impl) ... SKIPPED [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SKIPPED [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) SKIPPED [INFO] Cytoscape Webservice Impl (webservice-impl) ....... SKIPPED [INFO] Cytoscape NCBI Webservice Impl (webservice-ncbi-client-impl) SKIPPED [INFO] org.cytoscape.work-headless-impl .................. SKIPPED [INFO] Cytoscape PSIQUIC Web Service Impl (webservice-psicquic-client-impl) SKIPPED [INFO] Cytoscape Datasource Impl (datasource-impl) ....... SKIPPED [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SKIPPED [INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SKIPPED [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SKIPPED [INFO] Cytoscape Scripting Impl (scripting-impl) ......... SKIPPED [INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 12:19.911s [INFO] Finished at: Mon Jun 11 13:44:11 GMT-05:00 2012 [INFO] Final Memory: 137M/354M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal com.agilejava.docbkx:docbkx-maven-plugin:2.0.9:generate-javahelp (default) on project help-impl: Failed to transform manual.xml. cause : Failed to transform manual.xml. Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal com.agilejava.docbkx:docbkx-maven-plugin:2.0.9:generate-javahelp (default) on project help-impl: Failed to transform manual.xml. at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:616) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) at java.util.concurrent.FutureTask.run(FutureTask.java:166) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) at java.lang.Thread.run(Thread.java:636) Caused by: org.apache.maven.plugin.MojoExecutionException: Failed to transform manual.xml. at com.agilejava.docbkx.maven.AbstractTransformerMojo.execute(AbstractTransformerMojo.java:233) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Caused by: javax.xml.transform.TransformerException: Failure reading <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/help-impl/src/docbkx/manual.xml> at com.icl.saxon.om.Builder.build(Builder.java:267) at com.icl.saxon.Controller.transform(Controller.java:936) at com.agilejava.docbkx.maven.AbstractTransformerMojo.execute(AbstractTransformerMojo.java:223) ... 29 more Caused by: java.io.FileNotFoundException: http://www.docbook.org/xml/4.4/docbookx.dtd at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1401) at org.apache.xerces.impl.XMLEntityManager.setupCurrentEntity(Unknown Source) at org.apache.xerces.impl.XMLEntityManager.startEntity(Unknown Source) at org.apache.xerces.impl.XMLEntityManager.startDTDEntity(Unknown Source) at org.apache.xerces.impl.XMLDTDScannerImpl.setInputSource(Unknown Source) at org.apache.xerces.impl.XMLDocumentScannerImpl$DTDDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at org.xml.sax.helpers.XMLFilterImpl.parse(XMLFilterImpl.java:357) at com.icl.saxon.om.Builder.build(Builder.java:265) ... 31 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to bad build status FAILURE -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
