Author: jm
Date: 2012-06-19 12:40:31 -0700 (Tue, 19 Jun 2012)
New Revision: 29619
Modified:
core3/impl/trunk/psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/data_mapper/PSIMI25EntryMapper.java
Log:
Fixes #1147: Fixed null pointer exception in PSI MI 2.5 mapper
Modified:
core3/impl/trunk/psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/data_mapper/PSIMI25EntryMapper.java
===================================================================
---
core3/impl/trunk/psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/data_mapper/PSIMI25EntryMapper.java
2012-06-19 17:58:05 UTC (rev 29618)
+++
core3/impl/trunk/psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/data_mapper/PSIMI25EntryMapper.java
2012-06-19 19:40:31 UTC (rev 29619)
@@ -222,9 +222,16 @@
private void processEdge(final Participant source, final Participant
target, final Interaction interaction,
final Collection<Participant> nodes, CyTable nodeTable,
CyTable edgeTable) {
- final CyNode sourceCyNode =
id2NodeMap.get(source.getInteractor().getId());
- final CyNode targetCyNode =
id2NodeMap.get(target.getInteractor().getId());
+ Interactor sourceInteractor = source.getInteractor();
+ Interactor targetInteractor = target.getInteractor();
+ if (sourceInteractor == null || targetInteractor == null) {
+ return;
+ }
+
+ final CyNode sourceCyNode =
id2NodeMap.get(sourceInteractor.getId());
+ final CyNode targetCyNode =
id2NodeMap.get(targetInteractor.getId());
+
// PPI does not have directinarity
final CyEdge edge = network.addEdge(sourceCyNode, targetCyNode,
false);
--
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