Author: rodche
Date: 2012-06-29 15:15:14 -0700 (Fri, 29 Jun 2012)
New Revision: 29730
Modified:
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/BioPaxMapper.java
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxDetailsPanel.java
Log:
Sacrifice one attribute (BioPAX OWL fragment to show in the right results
panel) for networks > 100 nodes, for performance/memoory...
Modified:
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/BioPaxMapper.java
===================================================================
---
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/BioPaxMapper.java
2012-06-29 18:47:27 UTC (rev 29729)
+++
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/BioPaxMapper.java
2012-06-29 22:15:14 UTC (rev 29730)
@@ -691,9 +691,13 @@
// add a piece of the BioPAX (RDF/XML without parent|child
elements)
- String owl = BioPaxUtil.toOwl(element); // (requires
common-lang-2.4 bundle to be started)
- AttributeUtil.set(network, node, CyNetwork.HIDDEN_ATTRS,
BioPaxUtil.BIOPAX_DATA, owl, String.class);
+ //the following attr. was experimental, not so important for
users...
+ if(network.getNodeCount() < 100) { //- this condition was added
for performance/memory...
+ String owl = BioPaxUtil.toOwl(element); // (requires
common-lang-2.4 bundle to be started)
+ AttributeUtil.set(network, node,
CyNetwork.HIDDEN_ATTRS, BioPaxUtil.BIOPAX_DATA, owl, String.class);
+ }
+
String name =
BioPaxUtil.truncateLongStr(BioPaxUtil.getNodeName(element) + "");
if (!(element instanceof Interaction)) {
Modified:
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxDetailsPanel.java
===================================================================
---
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxDetailsPanel.java
2012-06-29 18:47:27 UTC (rev 29729)
+++
core3/impl/trunk/biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxDetailsPanel.java
2012-06-29 22:15:14 UTC (rev 29730)
@@ -209,8 +209,8 @@
// excerpt from the BioPAX OWL
stringRef = null;
+ //the following attr. was experimental, not so important for
users; may be null (not generated) in large networks
stringRef =
network.getRow(node,CyNetwork.HIDDEN_ATTRS).get(BioPaxUtil.BIOPAX_DATA,
String.class);
- //stringRef = row.get(BioPaxUtil.BIOPAX_DATA, String.class);
if (stringRef != null) {
appendHeader("BioPAX L3 (fragment)", buf);
buf.append("<pre class='excerpt'>" +
StringEscapeUtils.escapeXml(stringRef) + "</pre>");
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