See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/1401/changes>
Changes: [kono] Reformat only. [kono] fixes #1287 Visual Style will be applied when necessary. Update view will be called only when something had been chaned in the view model layer. ------------------------------------------ [...truncated 14537 lines...] Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/vizmap-impl/maven-metadata.xml (538 B at 15.0 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/vizmap-impl/3.0.0-alpha10-SNAPSHOT/vizmap-impl-3.0.0-alpha10-20120731.231002-87-sources.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/vizmap-impl/3.0.0-alpha10-SNAPSHOT/vizmap-impl-3.0.0-alpha10-20120731.231002-87-sources.jar (38 KB at 951.2 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/vizmap-impl/3.0.0-alpha10-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/vizmap-impl/3.0.0-alpha10-SNAPSHOT/maven-metadata.xml (1 KB at 40.0 KB/sec) [INFO] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [INFO] --- maven-bundle-plugin:2.3.4:deploy (default-deploy) @ vizmap-impl --- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/vizmap-impl/impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$vizmap-impl/builds/2012-07-31_18-04-15/archive/org.cytoscape/vizmap-impl/3.0.0-alpha10-SNAPSHOT/vizmap-impl-3.0.0-alpha10-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/vizmap-impl/impl/target/vizmap-impl-3.0.0-alpha10-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$vizmap-impl/builds/2012-07-31_18-04-15/archive/org.cytoscape/vizmap-impl/3.0.0-alpha10-20120731.231002-87/vizmap-impl-3.0.0-alpha10-20120731.231002-87.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/vizmap-impl/impl/target/vizmap-impl-3.0.0-alpha10-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$vizmap-impl/builds/2012-07-31_18-04-15/archive/org.cytoscape/vizmap-impl/3.0.0-alpha10-20120731.231002-87/vizmap-impl-3.0.0-alpha10-20120731.231002-87-sources.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Application Impl (application-impl) 3.0.0-alpha10-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ application-impl --- [INFO] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ application-impl --- [INFO] Compiling 5 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/application-impl/target/classes> [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/application-impl/src/test/resources> [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ application-impl --- [INFO] [INFO] Compiling 1 source file to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/application-impl/target/test-classes> [INFO] --- maven-compiler-plugin:2.3.2:testCompile (default-testCompile) @ application-impl --- [INFO] [INFO] Surefire report directory: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/application-impl/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ application-impl --- Running org.cytoscape.application.internal.CyApplicationManagerImplTest Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.91 sec Results : Tests run: 17, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] --- maven-bundle-plugin:2.3.4:bundle (default-bundle) @ application-impl --- ignoring exception during new ExecutedMojo null [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (attach-sources) @ application-impl --- [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/application-impl/target/application-impl-3.0.0-alpha10-SNAPSHOT-sources.jar> [INFO] [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/application-impl/target/application-impl-3.0.0-alpha10-SNAPSHOT.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/application-impl-3.0.0-alpha10-SNAPSHOT.jar [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/application-impl/pom.xml> to /opt/tomcat-home/.m2/repository/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/application-impl-3.0.0-alpha10-SNAPSHOT.pom [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/application-impl/target/application-impl-3.0.0-alpha10-SNAPSHOT-sources.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/application-impl-3.0.0-alpha10-SNAPSHOT-sources.jar [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ application-impl --- [INFO] [INFO] --- maven-bundle-plugin:2.3.4:install (default-install) @ application-impl --- [INFO] Installing org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/application-impl-3.0.0-alpha10-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/maven-metadata.xml [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ application-impl --- Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/maven-metadata.xml (2 KB at 21.4 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/application-impl-3.0.0-alpha10-20120731.231007-87.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/application-impl-3.0.0-alpha10-20120731.231007-87.jar (15 KB at 337.9 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/application-impl-3.0.0-alpha10-20120731.231007-87.pom Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/application-impl-3.0.0-alpha10-20120731.231007-87.pom (4 KB at 41.1 KB/sec) Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/maven-metadata.xml Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/maven-metadata.xml (344 B at 6.9 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/maven-metadata.xml (2 KB at 18.3 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/maven-metadata.xml (344 B at 0.0 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/application-impl-3.0.0-alpha10-20120731.231007-87-sources.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/application-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$application-impl/builds/2012-07-31_18-04-15/archive/org.cytoscape/application-impl/3.0.0-alpha10-SNAPSHOT/application-impl-3.0.0-alpha10-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/application-impl/target/application-impl-3.0.0-alpha10-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$application-impl/builds/2012-07-31_18-04-15/archive/org.cytoscape/application-impl/3.0.0-alpha10-20120731.231007-87/application-impl-3.0.0-alpha10-20120731.231007-87.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/application-impl/target/application-impl-3.0.0-alpha10-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$application-impl/builds/2012-07-31_18-04-15/archive/org.cytoscape/application-impl/3.0.0-alpha10-20120731.231007-87/application-impl-3.0.0-alpha10-20120731.231007-87-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [3.612s] [INFO] Cytoscape BioPAX Impl (biopax-impl) ............... SUCCESS [6.404s] [INFO] Cytoscape Command Executor Impl (command-executor-impl) SUCCESS [3.630s] [INFO] Cytoscape Equations Impl (equations-impl) ......... SUCCESS [7.099s] [INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SUCCESS [0.386s] [INFO] Cytoscape Model Impl (model-impl) ................. SUCCESS [7.406s] [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SUCCESS [0.429s] [INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SUCCESS [3.520s] [INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SUCCESS [0.395s] [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SUCCESS [48.966s] [INFO] org.cytoscape.work-impl ........................... SUCCESS [2.671s] [INFO] Cytoscape Core Task Impl (core-task-impl) ......... SUCCESS [8.388s] [INFO] Cytoscape CPath2 Impl (cpath2-impl) ............... SUCCESS [6.703s] [INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SUCCESS [0.415s] [INFO] Cytoscape IO Impl (io-impl) ....................... SUCCESS [10.908s] [INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SUCCESS [0.341s] [INFO] Cytoscape Event Impl (event-impl) ................. SUCCESS [9.288s] [INFO] Cytoscape Layout Impl (layout-impl) ............... SUCCESS [4.755s] [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SUCCESS [13.622s] [INFO] Cytoscape Editor Impl (editor-impl) ............... SUCCESS [2.756s] [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS [3.006s] [INFO] Cytoscape Event Impl IT (event-impl-it) ........... SUCCESS [6.041s] [INFO] Cytoscape Filters Impl (filter-impl) .............. SUCCESS [3.357s] [INFO] Cytoscape GraphML Impl (graphml-impl) ............. SUCCESS [4.512s] [INFO] Cytoscape Groups Impl (group-impl) ................ SUCCESS [4.013s] [INFO] Cytoscape Group Data Impl (group-data-impl) ....... SUCCESS [2.588s] [INFO] Cytoscape Group View Impl (group-view-impl) ....... SUCCESS [2.984s] [INFO] Cytoscape IO Impl Performance (io-impl-performance) SUCCESS [12.654s] [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS [4.111s] [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SUCCESS [3.726s] [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SUCCESS [3.221s] [INFO] Cytoscape Linkout Impl (linkout-impl) ............. SUCCESS [2.373s] [INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SUCCESS [5.509s] [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SUCCESS [3.059s] [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SUCCESS [7.446s] [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SUCCESS [6.121s] [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SUCCESS [5.520s] [INFO] Cytoscape Merge Impl (network-merge-impl) ......... SUCCESS [3.194s] [INFO] Cytoscape App Impl (app-impl) ..................... SUCCESS [6.482s] [INFO] Cytoscape Presentation Impl (presentation-impl) ... SUCCESS [3.874s] [INFO] Cytoscape Property Impl (property-impl) ........... SUCCESS [2.007s] [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SUCCESS [0.360s] [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... SUCCESS [12.352s] [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SUCCESS [30.490s] [INFO] Cytoscape SBML Impl (sbml-impl) ................... SUCCESS [6.120s] [INFO] Cytoscape Search Impl (search-impl) ............... SUCCESS [2.639s] [INFO] Cytoscape Session Impl Parent (session-impl-parent) SUCCESS [0.338s] [INFO] Cytoscape Session Impl (session-impl) ............. SUCCESS [2.290s] [INFO] Cytoscape Datasource Impl (datasource-impl) ....... SUCCESS [3.604s] [INFO] org.cytoscape.work-headless-impl .................. SUCCESS [2.208s] [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SUCCESS [0.351s] [INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SUCCESS [6.982s] [INFO] Cytoscape Application Impl (application-impl) ..... FAILURE [59.943s] [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SKIPPED [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED [INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SKIPPED [INFO] Cytoscape Session Impl Integration Test (session-impl-integration-test) SKIPPED [INFO] Cytoscape Help Impl (help-impl) ................... SKIPPED [INFO] Cytoscape Swing Utility Impl (swing-util-impl) .... SKIPPED [INFO] Cytoscape Swing Application Impl (swing-application-impl) SKIPPED [INFO] Cytoscape Table Browser Impl (table-browser-impl) . SKIPPED [INFO] Cytoscape Table Import Impl (table-import-impl) ... SKIPPED [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) SKIPPED [INFO] Cytoscape Webservice Impl (webservice-impl) ....... SKIPPED [INFO] Cytoscape NCBI Webservice Impl (webservice-ncbi-client-impl) SKIPPED [INFO] Cytoscape PSIQUIC Web Service Impl (webservice-psicquic-client-impl) SKIPPED [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SKIPPED [INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SKIPPED [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SKIPPED [INFO] Cytoscape Scripting Impl (scripting-impl) ......... SKIPPED [INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Group Session Restore Shim Impl (group-session-restore-shim-impl) SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6:44.152s [INFO] Finished at: Tue Jul 31 18:11:03 GMT-05:00 2012 [INFO] Final Memory: 225M/538M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-deploy-plugin:2.7:deploy (default-deploy) on project application-impl: Failed to deploy artifacts: Could not transfer artifact org.cytoscape:application-impl:jar:sources:3.0.0-alpha10-20120731.231007-87 from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection refused cause : Failed to deploy artifacts: Could not transfer artifact org.cytoscape:application-impl:jar:sources:3.0.0-alpha10-20120731.231007-87 from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection refused Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-deploy-plugin:2.7:deploy (default-deploy) on project application-impl: Failed to deploy artifacts: Could not transfer artifact org.cytoscape:application-impl:jar:sources:3.0.0-alpha10-20120731.231007-87 from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection refused at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.plugin.MojoExecutionException: Failed to deploy artifacts: Could not transfer artifact org.cytoscape:application-impl:jar:sources:3.0.0-alpha10-20120731.231007-87 from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection refused at org.apache.maven.plugin.deploy.DeployMojo.execute(DeployMojo.java:193) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Caused by: org.apache.maven.artifact.deployer.ArtifactDeploymentException: Failed to deploy artifacts: Could not transfer artifact org.cytoscape:application-impl:jar:sources:3.0.0-alpha10-20120731.231007-87 from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection refused at org.apache.maven.artifact.deployer.DefaultArtifactDeployer.deploy(DefaultArtifactDeployer.java:141) at org.apache.maven.plugin.deploy.AbstractDeployMojo.deploy(AbstractDeployMojo.java:167) at org.apache.maven.plugin.deploy.DeployMojo.execute(DeployMojo.java:188) ... 29 more Caused by: org.sonatype.aether.deployment.DeploymentException: Failed to deploy artifacts: Could not transfer artifact org.cytoscape:application-impl:jar:sources:3.0.0-alpha10-20120731.231007-87 from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection refused at org.sonatype.aether.impl.internal.DefaultDeployer.deploy(DefaultDeployer.java:284) at org.sonatype.aether.impl.internal.DefaultDeployer.deploy(DefaultDeployer.java:215) at org.sonatype.aether.impl.internal.DefaultRepositorySystem.deploy(DefaultRepositorySystem.java:480) at org.apache.maven.artifact.deployer.DefaultArtifactDeployer.deploy(DefaultArtifactDeployer.java:137) ... 31 more Caused by: org.sonatype.aether.transfer.ArtifactTransferException: Could not transfer artifact org.cytoscape:application-impl:jar:sources:3.0.0-alpha10-20120731.231007-87 from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection refused at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:949) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:940) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$PutTask.flush(WagonRepositoryConnector.java:864) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector.put(WagonRepositoryConnector.java:466) at org.sonatype.aether.impl.internal.DefaultDeployer.deploy(DefaultDeployer.java:278) ... 34 more Caused by: org.apache.maven.wagon.TransferFailedException: Error transferring file: Connection refused at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillOutputData(LightweightHttpWagon.java:176) at org.apache.maven.wagon.StreamWagon.getOutputStream(StreamWagon.java:188) at org.apache.maven.wagon.StreamWagon.put(StreamWagon.java:159) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$PutTask.run(WagonRepositoryConnector.java:825) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector.put(WagonRepositoryConnector.java:465) ... 35 more Caused by: java.net.ConnectException: Connection refused at java.net.PlainSocketImpl.socketConnect(Native Method) at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351) at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213) at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200) at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366) at java.net.Socket.connect(Socket.java:529) at java.net.Socket.connect(Socket.java:478) at sun.net.NetworkClient.doConnect(NetworkClient.java:163) at sun.net.www.http.HttpClient.openServer(HttpClient.java:388) at sun.net.www.http.HttpClient.openServer(HttpClient.java:523) at sun.net.www.http.HttpClient.<init>(HttpClient.java:227) at sun.net.www.http.HttpClient.New(HttpClient.java:300) at sun.net.www.http.HttpClient.New(HttpClient.java:317) at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:970) at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:911) at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:836) at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1014) at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillOutputData(LightweightHttpWagon.java:172) ... 39 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to bad build status FAILURE -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
