Author: mes
Date: 2012-07-31 17:17:39 -0700 (Tue, 31 Jul 2012)
New Revision: 30058
Modified:
csplugins/trunk/ucsd/mes/genomespace/weblaunch/
csplugins/trunk/ucsd/mes/genomespace/weblaunch/src/main/java/cytoscape/weblaunch/LaunchHelper.java
Log:
general cleanup of code
Property changes on: csplugins/trunk/ucsd/mes/genomespace/weblaunch
___________________________________________________________________
Added: svn:ignore
+ target
Modified:
csplugins/trunk/ucsd/mes/genomespace/weblaunch/src/main/java/cytoscape/weblaunch/LaunchHelper.java
===================================================================
---
csplugins/trunk/ucsd/mes/genomespace/weblaunch/src/main/java/cytoscape/weblaunch/LaunchHelper.java
2012-08-01 00:16:02 UTC (rev 30057)
+++
csplugins/trunk/ucsd/mes/genomespace/weblaunch/src/main/java/cytoscape/weblaunch/LaunchHelper.java
2012-08-01 00:17:39 UTC (rev 30058)
@@ -1,31 +1,28 @@
package cytoscape.weblaunch;
import java.awt.Desktop;
-import java.awt.Font;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
import java.io.File;
-import java.io.FileNotFoundException;
import java.io.IOException;
import java.net.URI;
import java.net.URL;
-import java.net.URISyntaxException;
-import java.net.MalformedURLException;
-import javax.swing.JEditorPane;
-import javax.swing.JLabel;
import javax.swing.JOptionPane;
-import javax.swing.event.HyperlinkListener;
-import javax.swing.event.HyperlinkEvent;
import javax.swing.JFileChooser;
-import java.nio.channels.*;
+import java.nio.channels.ReadableByteChannel;
+import java.nio.channels.Channels;
import java.io.FileOutputStream;
+import java.io.FileInputStream;
+import java.util.List;
+import java.util.ArrayList;
+import java.util.Properties;
public class LaunchHelper {
+
private static String version = "Cytoscape_v2.8.3";
private static String installerURL =
"http://www.cytoscape.org/download.html";;
private static final String MAC = "mac os x";
private static final String WINDOWS = "windows";
+ private static final String PREFERRED_PATH = "preferred.path";
public static void main(String[] args) {
@@ -33,7 +30,49 @@
String exe = getExecutable(os);
String path = getBestGuessPath(os);
+ path = validatePath(path, exe);
+ if ( path == null )
+ return;
+
+ // OK, all systems go!
+
+ String[] plugins = downloadPlugins();
+ String[] command = createCommand(getFile(path,exe),plugins);
+
+ storePreferredPath(path);
+
+ launch(command);
+ }
+
+ private static void launch(final String[] command) {
+ try {
+ Runtime rt = Runtime.getRuntime();
+ Process p = rt.exec(command);
+ StreamGobbler errorGobbler = new
StreamGobbler(p.getErrorStream(), "ERROR");
+ StreamGobbler outputGobbler = new
StreamGobbler(p.getInputStream(), "OUTPUT");
+ errorGobbler.start();
+ outputGobbler.start();
+ int exitVal = p.waitFor();
+ } catch (Exception e) {
+ JOptionPane.showMessageDialog(null,
+ "Error launching: " +
command[0] + "\n\nCaused by\n" + e.getMessage(),
+ "Could Not Launch
Cytoscape",
+
JOptionPane.ERROR_MESSAGE);
+ }
+ }
+
+ private static void storePreferredPath(String path) {
+ try {
+ Properties props = new Properties();
+ props.setProperty(PREFERRED_PATH,path);
+ props.store( new FileOutputStream( getPropsFile() ),
"Properties for GenomeSpace");
+ } catch (IOException ioe) { ioe.printStackTrace(System.err); }
+ }
+
+ private static String validatePath(final String inpath, final String
exe) {
+ String path = inpath;
+
if ( !executableExists(path,exe) ) {
File file = getDirectory();
if ( file != null )
@@ -52,35 +91,20 @@
if (returnVal == JFileChooser.APPROVE_OPTION)
path =
fc.getSelectedFile().getAbsolutePath();
} else {
- return;
+ return null;
}
}
- String[] command =
createCommand(getFile(path,exe),downloadPlugins());
-
- try {
- Runtime rt = Runtime.getRuntime();
- Process p = rt.exec(command);
- StreamGobbler errorGobbler = new
StreamGobbler(p.getErrorStream(), "ERROR");
- StreamGobbler outputGobbler = new
StreamGobbler(p.getInputStream(), "OUTPUT");
- errorGobbler.start();
- outputGobbler.start();
- int exitVal = p.waitFor();
- } catch (Exception e) {
- JOptionPane.showMessageDialog(null,
- "Cannot launch
"+exe+" in\n" + path,
- "Cannot Launch
Executable",
-
JOptionPane.ERROR_MESSAGE);
- }
+ return path;
}
- private static String[] createCommand(File f, String[] plugins) {
+ private static String[] createCommand(final File f, final String[]
plugins) {
String[] command = new String[ (plugins.length * 2) + 1];
int i = 0;
command[i] = f.getAbsolutePath();
- for ( String p : plugins ) {
+ for ( String plugin : plugins ) {
command[++i] = "-p";
- command[++i] = p;
+ command[++i] = plugin;
}
return command;
}
@@ -94,14 +118,19 @@
"http://chianti.ucsd.edu/cyto_web/plugins/pluginjardownload.php?id=493"; // NDB
Reader
};
- String[] filePaths = new String[urls.length];
- for (int i = 0; i < urls.length; i++) {
- filePaths[i] = downloadURL(urls[i]).getAbsolutePath();
+ List<String> filePaths = new ArrayList<String>();
+ for (String url : urls) {
+ File f = downloadURL(url);
+ if ( f != null )
+ filePaths.add( f.getAbsolutePath() );
+ else
+ System.err.println("Couldn't download plugin
URL: " + url);
}
- return filePaths;
+
+ return filePaths.toArray(new String[filePaths.size()]);
}
- private static File downloadURL(String u) {
+ private static File downloadURL(final String u) {
File f = null;
FileOutputStream fos = null;
try {
@@ -112,26 +141,26 @@
fos.getChannel().transferFrom(rbc, 0, 1 << 24);
fos.close();
} catch (Exception e) {
- e.printStackTrace();
+ e.printStackTrace(System.err);
} finally {
if ( fos != null ) {
- try { fos.close(); } catch (IOException ioe) { }
+ try { fos.close(); } catch (IOException ioe) {
ioe.printStackTrace(System.err); }
fos = null;
}
}
return f;
}
- private static boolean executableExists(String path, String exe) {
+ private static boolean executableExists(final String path, final String
exe) {
File file = getFile(path,exe);
return file.exists();
}
- private static File getFile(String path, String exe) {
+ private static File getFile(final String path, final String exe) {
return new File(path + System.getProperty("file.separator") +
exe);
}
- private static String getExecutable(String os) {
+ private static String getExecutable(final String os) {
String exe;
if (os.startsWith(WINDOWS))
exe = "cytoscape.bat";
@@ -141,8 +170,11 @@
return exe;
}
- private static String getBestGuessPath(String os) {
- String path;
+ private static String getBestGuessPath(final String os) {
+ String path = getPreferredPath();
+ if ( path != null )
+ return path;
+
if (os.equals(MAC))
path = "/Applications";
else
@@ -151,7 +183,27 @@
return path;
}
- private static void openURL(String urlString) {
+ private static File getPropsFile() {
+ File f = new File( System.getProperty("user.home") +
System.getProperty("file.separator") +
+ ".cytoscape" +
System.getProperty("file.separator") + "genomespace-cytoscape.props" );
+ return f;
+ }
+
+ private static String getPreferredPath() {
+ try {
+ File f = getPropsFile();
+ if ( !f.exists() )
+ return null;
+
+ Properties props = new Properties();
+ props.load( new FileInputStream(f) );
+ return props.getProperty(PREFERRED_PATH);
+
+ } catch (IOException ioe) { ioe.printStackTrace(System.err); }
+ return null;
+ }
+
+ private static void openURL(final String urlString) {
URL url = null;
try {
@@ -185,21 +237,11 @@
URI uri = new URI(url.toString());
desktop.browse(uri);
- } catch (URISyntaxException e) {
+ } catch (Exception e) {
JOptionPane.showMessageDialog(null,
- "URISyntaxException:
Failed to launch the link to installer:\n"+url,
- "Cannot Launch Link",
+ "Exception: Failed to
launch the link to installer:\n"+url,
+ "Could Not Open Link",
JOptionPane.ERROR_MESSAGE);
- } catch (MalformedURLException e) {
- JOptionPane.showMessageDialog(null,
-
"MalformedURLException: Failed to launch the link to installer:\n"+url,
- "Cannot Launch Link",
-
JOptionPane.ERROR_MESSAGE);
- } catch (IOException e) {
- JOptionPane.showMessageDialog(null,
- "IOException: Failed
to launch the link to installer:\n"+url,
- "Cannot Launch Link",
-
JOptionPane.ERROR_MESSAGE);
}
}
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