See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/704/changes>
Changes: [pwang] Add a new method [pwang] Add a dependency ------------------------------------------ [...truncated 1030 lines...] A application-api/src/test/java/org/cytoscape/application/events/CyStartEventTest.java A application-api/src/test/java/org/cytoscape/application/events/SetSelectedNteworkViewsEventTest.java A application-api/src/main A application-api/src/main/java A application-api/src/main/java/org A application-api/src/main/java/org/cytoscape A application-api/src/main/java/org/cytoscape/application A application-api/src/main/java/org/cytoscape/application/CyVersion.java A application-api/src/main/java/org/cytoscape/application/events A application-api/src/main/java/org/cytoscape/application/events/CyStartListener.java A application-api/src/main/java/org/cytoscape/application/events/SetSelectedNetworkViewsListener.java A application-api/src/main/java/org/cytoscape/application/events/SetSelectedNetworksEvent.java A application-api/src/main/java/org/cytoscape/application/events/SetCurrentRenderingEngineEvent.java A application-api/src/main/java/org/cytoscape/application/events/package-info.java A application-api/src/main/java/org/cytoscape/application/events/SetCurrentNetworkViewEvent.java A application-api/src/main/java/org/cytoscape/application/events/SetSelectedNetworksListener.java A application-api/src/main/java/org/cytoscape/application/events/SetCurrentRenderingEngineListener.java A application-api/src/main/java/org/cytoscape/application/events/CyShutdownEvent.java A application-api/src/main/java/org/cytoscape/application/events/SetCurrentNetworkViewListener.java A application-api/src/main/java/org/cytoscape/application/events/SetCurrentNetworkEvent.java A application-api/src/main/java/org/cytoscape/application/events/CyStartEvent.java A application-api/src/main/java/org/cytoscape/application/events/CyShutdownListener.java A application-api/src/main/java/org/cytoscape/application/events/SetCurrentNetworkListener.java A application-api/src/main/java/org/cytoscape/application/events/SetSelectedNetworkViewsEvent.java A application-api/src/main/java/org/cytoscape/application/package-info.java A application-api/src/main/java/org/cytoscape/application/CyApplicationConfiguration.java A application-api/src/main/java/org/cytoscape/application/CyShutdown.java A application-api/src/main/java/org/cytoscape/application/CyApplicationManager.java A application-api/pom.xml A swing-app-api A swing-app-api/src A swing-app-api/src/test A swing-app-api/src/test/java A swing-app-api/src/test/java/org A swing-app-api/src/test/java/org/cytoscape A swing-app-api/src/test/java/org/cytoscape/app A swing-app-api/src/test/java/org/cytoscape/app/swing A swing-app-api/src/test/java/org/cytoscape/app/swing/CySwingAppTest.java A swing-app-api/src/test/java/org/cytoscape/app/swing/CySwingAppAdapterTest.java A swing-app-api/src/main A swing-app-api/src/main/java A swing-app-api/src/main/java/org A swing-app-api/src/main/java/org/cytoscape A swing-app-api/src/main/java/org/cytoscape/app A swing-app-api/src/main/java/org/cytoscape/app/swing A swing-app-api/src/main/java/org/cytoscape/app/swing/package-info.java A swing-app-api/src/main/java/org/cytoscape/app/swing/CySwingAppAdapter.java A swing-app-api/src/main/java/org/cytoscape/app/swing/AbstractCySwingApp.java A swing-app-api/pom.xml A vizmap-api A vizmap-api/src A vizmap-api/src/test A vizmap-api/src/test/java A vizmap-api/src/test/java/org A vizmap-api/src/test/java/org/cytoscape A vizmap-api/src/test/java/org/cytoscape/view A vizmap-api/src/test/java/org/cytoscape/view/vizmap A vizmap-api/src/test/java/org/cytoscape/view/vizmap/AbstractVisualStyleFactoryTest.java A vizmap-api/src/test/java/org/cytoscape/view/vizmap/VisualPropertyDependencyTest.java A vizmap-api/src/test/java/org/cytoscape/view/vizmap/AbstractVisualStyleTest.java A vizmap-api/src/test/java/org/cytoscape/view/vizmap/AbstractVisualMappingFunctionTest.java A vizmap-api/src/test/java/org/cytoscape/view/vizmap/VizmapEventsTest.java A vizmap-api/src/test/java/org/cytoscape/view/vizmap/AbstractVisualMappingManagerTest.java A vizmap-api/src/test/java/org/cytoscape/view/vizmap/mappings A vizmap-api/src/test/java/org/cytoscape/view/vizmap/mappings/BoundaryRangeValuesTest.java A vizmap-api/src/test/java/org/cytoscape/view/vizmap/mappings/AbstractVisualMappingFunctionTest.java A vizmap-api/src/test/java/org/cytoscape/view/vizmap/mappings/ContinuousMappingPointTest.java A vizmap-api/src/main A vizmap-api/src/main/java A vizmap-api/src/main/java/org A vizmap-api/src/main/java/org/cytoscape A vizmap-api/src/main/java/org/cytoscape/view A vizmap-api/src/main/java/org/cytoscape/view/vizmap A vizmap-api/src/main/java/org/cytoscape/view/vizmap/VisualPropertyDependencyFactory.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/VisualStyle.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/events AU vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleChangedEvent.java AU vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualMappingFunctionChangedEvent.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAboutToBeRemovedListener.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleSetEvent.java AU vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleChangedListener.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/package-info.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/SetCurrentVisualStyleEvent.java AU vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualMappingFunctionChangedListener.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleSetListener.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAddedEvent.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/SetCurrentVisualStyleListener.java AU vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleChangeRecord.java AU vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualMappingFunctionChangeRecord.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAddedListener.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/events/VisualStyleAboutToBeRemovedEvent.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/package-info.java AU vizmap-api/src/main/java/org/cytoscape/view/vizmap/VisualMappingFunction.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/VisualPropertyDependency.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/VisualMappingManager.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/VisualStyleFactory.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/VisualMappingFunctionFactory.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/mappings A vizmap-api/src/main/java/org/cytoscape/view/vizmap/mappings/BoundaryRangeValues.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/mappings/ContinuousMapping.java AU vizmap-api/src/main/java/org/cytoscape/view/vizmap/mappings/PassthroughMapping.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/mappings/package-info.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/mappings/ValueTranslator.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/mappings/AbstractVisualMappingFunction.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/mappings/ContinuousMappingPoint.java A vizmap-api/src/main/java/org/cytoscape/view/vizmap/mappings/DiscreteMapping.java A vizmap-api/src/main/resources A vizmap-api/src/main/resources/META-INF A vizmap-api/pom.xml A io-api A io-api/src A io-api/src/test A io-api/src/test/java A io-api/src/test/java/org A io-api/src/test/java/org/cytoscape A io-api/src/test/java/org/cytoscape/io A io-api/src/test/java/org/cytoscape/io/CyFileFilterTest.java A io-api/src/test/java/org/cytoscape/io/BasicCyFileFilterTest.java A io-api/src/test/java/org/cytoscape/io/DataCategoryTest.java A io-api/src/test/java/org/cytoscape/io/write A io-api/src/test/java/org/cytoscape/io/DummyTest.java A io-api/src/test/java/org/cytoscape/io/read A io-api/src/test/java/org/cytoscape/io/read/InputStreamTaskFactoryTest.java A io-api/src/test/java/org/cytoscape/io/read/AbstractInputStreamTaskFactoryTest.java A io-api/src/test/resources A io-api/src/test/resources/filterTest.txt A io-api/src/test/resources/filterTest.xml A io-api/src/main A io-api/src/main/java A io-api/src/main/java/org A io-api/src/main/java/org/cytoscape A io-api/src/main/java/org/cytoscape/io A io-api/src/main/java/org/cytoscape/io/CyFileFilter.java A io-api/src/main/java/org/cytoscape/io/BasicCyFileFilter.java A io-api/src/main/java/org/cytoscape/io/package-info.java A io-api/src/main/java/org/cytoscape/io/DataCategory.java A io-api/src/main/java/org/cytoscape/io/write A io-api/src/main/java/org/cytoscape/io/write/PresentationWriterFactory.java A io-api/src/main/java/org/cytoscape/io/write/CyWriterFactory.java A io-api/src/main/java/org/cytoscape/io/write/PresentationWriterManager.java A io-api/src/main/java/org/cytoscape/io/write/CyWriterManager.java A io-api/src/main/java/org/cytoscape/io/write/CySessionWriterFactory.java A io-api/src/main/java/org/cytoscape/io/write/CyPropertyWriterFactory.java A io-api/src/main/java/org/cytoscape/io/write/CyNetworkViewWriterFactory.java A io-api/src/main/java/org/cytoscape/io/write/CySessionWriterManager.java A io-api/src/main/java/org/cytoscape/io/write/CyWriter.java A io-api/src/main/java/org/cytoscape/io/write/CyTableWriterFactory.java A io-api/src/main/java/org/cytoscape/io/write/CyPropertyWriterManager.java A io-api/src/main/java/org/cytoscape/io/write/CyNetworkViewWriterManager.java A io-api/src/main/java/org/cytoscape/io/write/CyTableWriterManager.java A io-api/src/main/java/org/cytoscape/io/write/package-info.java A io-api/src/main/java/org/cytoscape/io/write/VizmapWriterFactory.java A io-api/src/main/java/org/cytoscape/io/write/VizmapWriterManager.java A io-api/src/main/java/org/cytoscape/io/read A io-api/src/main/java/org/cytoscape/io/read/CyTableReaderManager.java A io-api/src/main/java/org/cytoscape/io/read/CySessionReader.java A io-api/src/main/java/org/cytoscape/io/read/CyNetworkReaderManager.java A io-api/src/main/java/org/cytoscape/io/read/CyPropertyReader.java A io-api/src/main/java/org/cytoscape/io/read/VizmapReaderManager.java A io-api/src/main/java/org/cytoscape/io/read/package-info.java A io-api/src/main/java/org/cytoscape/io/read/CyTableReader.java A io-api/src/main/java/org/cytoscape/io/read/InputStreamTaskFactory.java A io-api/src/main/java/org/cytoscape/io/read/CyNetworkReader.java A io-api/src/main/java/org/cytoscape/io/read/VizmapReader.java A io-api/src/main/java/org/cytoscape/io/read/AbstractInputStreamTaskFactory.java A io-api/src/main/java/org/cytoscape/io/read/CySessionReaderManager.java A io-api/src/main/java/org/cytoscape/io/read/CyPropertyReaderManager.java A io-api/src/main/java/org/cytoscape/io/CyFileFilterProvider.java A io-api/src/main/java/org/cytoscape/io/util A io-api/src/main/java/org/cytoscape/io/util/package-info.java A io-api/src/main/java/org/cytoscape/io/util/StreamUtil.java A io-api/src/main/java/org/cytoscape/io/util/RecentlyOpenedTracker.java A io-api/src/main/resources A io-api/src/main/resources/META-INF A io-api/pom.xml A work-swing-api A work-swing-api/src A work-swing-api/src/test A work-swing-api/src/test/java A work-swing-api/src/test/java/org A work-swing-api/src/test/java/org/cytoscape A work-swing-api/src/test/java/org/cytoscape/work A work-swing-api/src/test/java/org/cytoscape/work/swing A work-swing-api/src/test/java/org/cytoscape/work/swing/SimpleGUITunableHandlerFactoryTest.java A work-swing-api/src/test/java/org/cytoscape/work/swing/AbstractGUITunableHandlerTest.java A work-swing-api/src/test/java/org/cytoscape/work/swing/HasAnnotatedMethod.java A work-swing-api/src/test/java/org/cytoscape/work/swing/HasAnnotatedField.java A work-swing-api/src/main A work-swing-api/src/main/java A work-swing-api/src/main/java/org A work-swing-api/src/main/java/org/cytoscape A work-swing-api/src/main/java/org/cytoscape/work A work-swing-api/src/main/java/org/cytoscape/work/swing A work-swing-api/src/main/java/org/cytoscape/work/swing/SimpleGUITunableHandlerFactory.java A work-swing-api/src/main/java/org/cytoscape/work/swing/AbstractGUITunableHandler.java A work-swing-api/src/main/java/org/cytoscape/work/swing/package-info.java A work-swing-api/src/main/java/org/cytoscape/work/swing/GUITunableHandlerFactory.java A work-swing-api/src/main/java/org/cytoscape/work/swing/undo A work-swing-api/src/main/java/org/cytoscape/work/swing/undo/package-info.java A work-swing-api/src/main/java/org/cytoscape/work/swing/undo/SwingUndoSupport.java A work-swing-api/src/main/java/org/cytoscape/work/swing/DynamicSubmenuListener.java A work-swing-api/src/main/java/org/cytoscape/work/swing/DialogTaskManager.java A work-swing-api/src/main/java/org/cytoscape/work/swing/DirectlyPresentableTunableHandler.java A work-swing-api/src/main/java/org/cytoscape/work/swing/GUITunableHandler.java A work-swing-api/src/main/java/org/cytoscape/work/swing/PanelTaskManager.java A work-swing-api/pom.xml U . At revision 30194 Parsing POMs Modules changed, recalculating dependency graph [trunk] $ /usr/lib/jvm/default-java/bin/java -Djava.awt.headless=true -Xmx768M -XX:MaxPermSize=256M -cp /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.2.jar:/opt/maven/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /opt/maven /var/lib/tomcat6/webapps/jenkins/WEB-INF/lib/remoting-2.11.jar /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.2.jar 43062 <===[JENKINS REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... mavenExecutionResult exceptions not empty message : The projects in the reactor contain a cyclic reference: Edge between 'Vertex{label='org.cytoscape:datasource-api:3.0.0-beta3-SNAPSHOT'}' and 'Vertex{label='org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT'}' introduces to cycle in the graph org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:session-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:vizmap-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:property-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:datasource-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT cause : Edge between 'Vertex{label='org.cytoscape:datasource-api:3.0.0-beta3-SNAPSHOT'}' and 'Vertex{label='org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT'}' introduces to cycle in the graph org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:session-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:vizmap-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:property-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:datasource-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT Stack trace : org.apache.maven.ProjectCycleException: The projects in the reactor contain a cyclic reference: Edge between 'Vertex{label='org.cytoscape:datasource-api:3.0.0-beta3-SNAPSHOT'}' and 'Vertex{label='org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT'}' introduces to cycle in the graph org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:session-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:vizmap-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:property-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:datasource-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:299) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:662) Caused by: org.codehaus.plexus.util.dag.CycleDetectedException: Edge between 'Vertex{label='org.cytoscape:datasource-api:3.0.0-beta3-SNAPSHOT'}' and 'Vertex{label='org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT'}' introduces to cycle in the graph org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:session-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:vizmap-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:property-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:datasource-api:3.0.0-beta3-SNAPSHOT --> org.cytoscape:io-api:3.0.0-beta3-SNAPSHOT at org.codehaus.plexus.util.dag.DAG.addEdge(DAG.java:143) at org.apache.maven.project.ProjectSorter.addEdge(ProjectSorter.java:219) at org.apache.maven.project.ProjectSorter.addEdge(ProjectSorter.java:184) at org.apache.maven.project.ProjectSorter.<init>(ProjectSorter.java:115) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:287) ... 20 more channel stopped Skipping sonar analysis due to bad build status FAILURE -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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