See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/1491/>
------------------------------------------ [...truncated 15106 lines...] Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/swing-util-impl/maven-metadata.xml (296 B at 3.2 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/swing-util-impl/3.0.0-alpha10-SNAPSHOT/swing-util-impl-3.0.0-alpha10-20120815.013314-176-sources.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/swing-util-impl/3.0.0-alpha10-SNAPSHOT/swing-util-impl-3.0.0-alpha10-20120815.013314-176-sources.jar (7 KB at 123.5 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/swing-util-impl/3.0.0-alpha10-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/swing-util-impl/3.0.0-alpha10-SNAPSHOT/maven-metadata.xml (2 KB at 32.5 KB/sec) [INFO] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [INFO] --- maven-bundle-plugin:2.3.4:deploy (default-deploy) @ swing-util-impl --- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-util-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$swing-util-impl/builds/2012-08-14_20-23-18/archive/org.cytoscape/swing-util-impl/3.0.0-alpha10-SNAPSHOT/swing-util-impl-3.0.0-alpha10-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-util-impl/target/swing-util-impl-3.0.0-alpha10-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$swing-util-impl/builds/2012-08-14_20-23-18/archive/org.cytoscape/swing-util-impl/3.0.0-alpha10-20120815.013314-176/swing-util-impl-3.0.0-alpha10-20120815.013314-176.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-util-impl/target/swing-util-impl-3.0.0-alpha10-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$swing-util-impl/builds/2012-08-14_20-23-18/archive/org.cytoscape/swing-util-impl/3.0.0-alpha10-20120815.013314-176/swing-util-impl-3.0.0-alpha10-20120815.013314-176-sources.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Swing Application Impl (swing-application-impl) 3.0.0-alpha10-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/lib/jvm/jdk1.6.0_32/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, junit:junit:jar:4.8.1:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/resources/xsd> [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/resources/xsd> [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io [INFO] generateDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/generated-sources/xjc/sessionState> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/resources/xsd/sessionState.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/generated-sources/xjc/sessionState> generatePackage=org.cytoscape.internal.io schemaLanguage=null schemas=[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/resources/xsd/sessionState.xsd]> bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@fedf49 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]]> Using java.util.ServiceLoader [INFO] File [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/resources/xsd/sessionState.xsd]> was changed since the last build. [INFO] File [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/pom.xml]> was changed since the last build. [INFO] Checking up-to-date depends [[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/resources/xsd/sessionState.xsd,> <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/pom.xml]].> [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1,344,993,680,000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/generated-sources/xjc/sessionState].> [INFO] Cleaning package directories. [INFO] XJC writing: org/cytoscape/internal/io/Cytopanel.java [INFO] XJC writing: org/cytoscape/internal/io/Cytopanels.java [INFO] XJC writing: org/cytoscape/internal/io/NetworkFrame.java [INFO] XJC writing: org/cytoscape/internal/io/NetworkFrames.java [INFO] XJC writing: org/cytoscape/internal/io/ObjectFactory.java [INFO] XJC writing: org/cytoscape/internal/io/SessionState.java [INFO] Finished execution. [INFO] [INFO] --- maven-dependency-plugin:2.1:unpack (copy-javahelp) @ swing-application-impl --- [INFO] Configured Artifact: org.cytoscape:help-impl:javahelp:3.0.0-alpha10-SNAPSHOT:zip [INFO] Unpacking <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/help-impl/target/help-impl-3.0.0-alpha10-SNAPSHOT-javahelp.zip> to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/help/cytoscape/help> with includes null and excludes:null [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ swing-application-impl --- [INFO] Copying 163 resources [INFO] Copying 7 resources [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ swing-application-impl --- [INFO] Compiling 77 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/classes> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/BookmarkDialogImpl.java>:[376,14] cannot find symbol symbol : method getCyDataSource(org.cytoscape.property.bookmark.DataSource) location: interface org.cytoscape.property.bookmark.BookmarksUtil [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/BookmarkDialogImpl.java>:[377,30] cannot find symbol symbol : method getCyDataSource(org.cytoscape.property.bookmark.DataSource) location: interface org.cytoscape.property.bookmark.BookmarksUtil [INFO] 2 errors [INFO] ------------------------------------------------------------- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$swing-application-impl/builds/2012-08-14_20-23-18/archive/org.cytoscape/swing-application-impl/3.0.0-alpha10-SNAPSHOT/swing-application-impl-3.0.0-alpha10-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [4.793s] [INFO] Cytoscape BioPAX Impl (biopax-impl) ............... SUCCESS [8.576s] [INFO] Cytoscape Command Executor Impl (command-executor-impl) SUCCESS [4.888s] [INFO] Cytoscape Equations Impl (equations-impl) ......... SUCCESS [11.547s] [INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SUCCESS [0.524s] [INFO] Cytoscape Model Impl (model-impl) ................. SUCCESS [13.536s] [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SUCCESS [0.605s] [INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SUCCESS [7.167s] [INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SUCCESS [2.245s] [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SUCCESS [1:28.500s] [INFO] org.cytoscape.work-impl ........................... SUCCESS [4.304s] [INFO] Cytoscape Core Task Impl (core-task-impl) ......... SUCCESS [14.798s] [INFO] Cytoscape CPath2 Impl (cpath2-impl) ............... SUCCESS [11.665s] [INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SUCCESS [0.486s] [INFO] Cytoscape IO Impl (io-impl) ....................... SUCCESS [22.184s] [INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SUCCESS [0.496s] [INFO] Cytoscape Event Impl (event-impl) ................. SUCCESS [10.688s] [INFO] Cytoscape Layout Impl (layout-impl) ............... SUCCESS [9.105s] [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SUCCESS [18.574s] [INFO] Cytoscape Editor Impl (editor-impl) ............... SUCCESS [3.259s] [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS [5.485s] [INFO] Cytoscape Event Impl IT (event-impl-it) ........... SUCCESS [9.528s] [INFO] Cytoscape Filters Impl (filter-impl) .............. SUCCESS [6.461s] [INFO] Cytoscape GraphML Impl (graphml-impl) ............. SUCCESS [8.060s] [INFO] Cytoscape Groups Impl (group-impl) ................ SUCCESS [8.011s] [INFO] Cytoscape Group Data Impl (group-data-impl) ....... SUCCESS [5.221s] [INFO] Cytoscape Group View Impl (group-view-impl) ....... SUCCESS [3.908s] [INFO] Cytoscape IO Impl Performance (io-impl-performance) SUCCESS [25.169s] [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS [7.610s] [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SUCCESS [4.880s] [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SUCCESS [5.544s] [INFO] Cytoscape Linkout Impl (linkout-impl) ............. SUCCESS [4.436s] [INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SUCCESS [9.966s] [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SUCCESS [3.211s] [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SUCCESS [8.002s] [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SUCCESS [7.463s] [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SUCCESS [7.228s] [INFO] Cytoscape Merge Impl (network-merge-impl) ......... SUCCESS [4.980s] [INFO] Cytoscape App Impl (app-impl) ..................... SUCCESS [9.018s] [INFO] Cytoscape Presentation Impl (presentation-impl) ... SUCCESS [4.286s] [INFO] Cytoscape Property Impl (property-impl) ........... SUCCESS [2.423s] [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SUCCESS [0.359s] [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... SUCCESS [15.928s] [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SUCCESS [31.765s] [INFO] Cytoscape SBML Impl (sbml-impl) ................... SUCCESS [5.504s] [INFO] Cytoscape Search Impl (search-impl) ............... SUCCESS [2.292s] [INFO] Cytoscape Session Impl Parent (session-impl-parent) SUCCESS [0.478s] [INFO] Cytoscape Session Impl (session-impl) ............. SUCCESS [2.923s] [INFO] Cytoscape Datasource Impl (datasource-impl) ....... SUCCESS [2.079s] [INFO] org.cytoscape.work-headless-impl .................. SUCCESS [3.132s] [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SUCCESS [0.323s] [INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SUCCESS [6.316s] [INFO] Cytoscape Application Impl (application-impl) ..... SUCCESS [5.028s] [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SUCCESS [4.284s] [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SUCCESS [0.425s] [INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SUCCESS [2.688s] [INFO] Cytoscape Session Impl Integration Test (session-impl-integration-test) SUCCESS [57.442s] [INFO] Cytoscape Help Impl (help-impl) ................... SUCCESS [11.695s] [INFO] Cytoscape Swing Utility Impl (swing-util-impl) .... SUCCESS [5.259s] [INFO] Cytoscape Swing Application Impl (swing-application-impl) FAILURE [2.623s] [INFO] Cytoscape Table Browser Impl (table-browser-impl) . SKIPPED [INFO] Cytoscape Table Import Impl (table-import-impl) ... SKIPPED [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) SKIPPED [INFO] Cytoscape Webservice Impl (webservice-impl) ....... SKIPPED [INFO] Cytoscape NCBI Webservice Impl (webservice-ncbi-client-impl) SKIPPED [INFO] Cytoscape PSIQUIC Web Service Impl (webservice-psicquic-client-impl) SKIPPED [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SKIPPED [INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SKIPPED [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SKIPPED [INFO] Cytoscape Scripting Impl (scripting-impl) ......... SKIPPED [INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Group Session Restore Shim Impl (group-session-restore-shim-impl) SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 9:56.497s [INFO] Finished at: Tue Aug 14 20:33:19 GMT-05:00 2012 [INFO] Final Memory: 146M/420M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:compile (default-compile) on project swing-application-impl: Compilation failure cause : Compilation failure Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:compile (default-compile) on project swing-application-impl: Compilation failure at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:656) at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to bad build status FAILURE -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
