See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/3/changes>

Changes:

[kono] fixes #1463 Pom files and version numbers are cleaned-up.  Still need 
some minor tune-ups before beta release.

------------------------------------------
[...truncated 66 lines...]
A         archetypes/api-provider-app/src/test
A         archetypes/api-provider-app/src/test/resources
A         archetypes/api-provider-app/src/test/resources/projects
A         archetypes/api-provider-app/src/test/resources/projects/basic
A         
archetypes/api-provider-app/src/test/resources/projects/basic/archetype.properties
A         archetypes/api-provider-app/src/test/resources/projects/basic/goal.txt
A         archetypes/api-provider-app/src/main
A         archetypes/api-provider-app/src/main/resources
A         archetypes/api-provider-app/src/main/resources/META-INF
A         archetypes/api-provider-app/src/main/resources/META-INF/maven
A         
archetypes/api-provider-app/src/main/resources/META-INF/maven/archetype-metadata.xml
A         archetypes/api-provider-app/src/main/resources/archetype-resources
A         archetypes/api-provider-app/src/main/resources/archetype-resources/src
A         
archetypes/api-provider-app/src/main/resources/archetype-resources/src/test
A         
archetypes/api-provider-app/src/main/resources/archetype-resources/src/test/java
A         
archetypes/api-provider-app/src/main/resources/archetype-resources/src/test/java/internal
A         
archetypes/api-provider-app/src/main/resources/archetype-resources/src/main
A         
archetypes/api-provider-app/src/main/resources/archetype-resources/src/main/java
A         
archetypes/api-provider-app/src/main/resources/archetype-resources/src/main/java/SampleAnalyzer.java
A         
archetypes/api-provider-app/src/main/resources/archetype-resources/src/main/java/internal
A         
archetypes/api-provider-app/src/main/resources/archetype-resources/src/main/java/internal/CyActivator.java
A         
archetypes/api-provider-app/src/main/resources/archetype-resources/src/main/java/internal/SampleAnalyzerImpl.java
A         
archetypes/api-provider-app/src/main/resources/archetype-resources/src/main/resources
A         
archetypes/api-provider-app/src/main/resources/archetype-resources/pom.xml
A         archetypes/api-provider-app/pom.xml
A         archetypes/task-app
A         archetypes/task-app/src
A         archetypes/task-app/src/test
A         archetypes/task-app/src/test/resources
A         archetypes/task-app/src/test/resources/projects
A         archetypes/task-app/src/test/resources/projects/basic
A         
archetypes/task-app/src/test/resources/projects/basic/archetype.properties
A         archetypes/task-app/src/test/resources/projects/basic/goal.txt
A         archetypes/task-app/src/main
A         archetypes/task-app/src/main/resources
A         archetypes/task-app/src/main/resources/META-INF
A         archetypes/task-app/src/main/resources/META-INF/maven
A         
archetypes/task-app/src/main/resources/META-INF/maven/archetype-metadata.xml
A         archetypes/task-app/src/main/resources/archetype-resources
A         archetypes/task-app/src/main/resources/archetype-resources/src
A         archetypes/task-app/src/main/resources/archetype-resources/src/test
A         
archetypes/task-app/src/main/resources/archetype-resources/src/test/java
A         
archetypes/task-app/src/main/resources/archetype-resources/src/test/java/internal
A         archetypes/task-app/src/main/resources/archetype-resources/src/main
A         
archetypes/task-app/src/main/resources/archetype-resources/src/main/java
A         
archetypes/task-app/src/main/resources/archetype-resources/src/main/java/internal
A         
archetypes/task-app/src/main/resources/archetype-resources/src/main/java/internal/SampleTask.java
A         
archetypes/task-app/src/main/resources/archetype-resources/src/main/java/internal/CyActivator.java
A         
archetypes/task-app/src/main/resources/archetype-resources/src/main/java/internal/SampleTaskFactory.java
A         
archetypes/task-app/src/main/resources/archetype-resources/src/main/resources
A         archetypes/task-app/src/main/resources/archetype-resources/pom.xml
A         archetypes/task-app/pom.xml
AU        archetypes/archetype-tester.sh
A         archetypes/cyaction-app
A         archetypes/cyaction-app/src
A         archetypes/cyaction-app/src/test
A         archetypes/cyaction-app/src/test/resources
A         archetypes/cyaction-app/src/test/resources/projects
A         archetypes/cyaction-app/src/test/resources/projects/basic
A         
archetypes/cyaction-app/src/test/resources/projects/basic/archetype.properties
A         archetypes/cyaction-app/src/test/resources/projects/basic/goal.txt
A         archetypes/cyaction-app/src/main
A         archetypes/cyaction-app/src/main/resources
A         archetypes/cyaction-app/src/main/resources/META-INF
A         archetypes/cyaction-app/src/main/resources/META-INF/maven
A         
archetypes/cyaction-app/src/main/resources/META-INF/maven/archetype-metadata.xml
A         archetypes/cyaction-app/src/main/resources/archetype-resources
A         archetypes/cyaction-app/src/main/resources/archetype-resources/src
A         
archetypes/cyaction-app/src/main/resources/archetype-resources/src/main
A         
archetypes/cyaction-app/src/main/resources/archetype-resources/src/main/java
A         
archetypes/cyaction-app/src/main/resources/archetype-resources/src/main/java/internal
A         
archetypes/cyaction-app/src/main/resources/archetype-resources/src/main/java/internal/MenuAction.java
A         
archetypes/cyaction-app/src/main/resources/archetype-resources/src/main/java/internal/CyActivator.java
A         archetypes/cyaction-app/src/main/resources/archetype-resources/pom.xml
A         archetypes/cyaction-app/pom.xml
A         archetypes/pom.xml
A         archetypes/readme.txt
A         cy-commons-cli
A         cy-commons-cli/src
A         cy-commons-cli/src/test
A         cy-commons-cli/src/test/java
A         cy-commons-cli/src/test/java/org
A         cy-commons-cli/src/test/java/org/apache
A         cy-commons-cli/src/test/java/org/apache/commons
A         cy-commons-cli/src/test/java/org/apache/commons/cli
A         cy-commons-cli/src/test/java/org/apache/commons/cli/BuildTest.java
A         
cy-commons-cli/src/test/java/org/apache/commons/cli/OptionBuilderTest.java
A         cy-commons-cli/src/test/java/org/apache/commons/cli/ValuesTest.java
A         
cy-commons-cli/src/test/java/org/apache/commons/cli/ApplicationTest.java
A         cy-commons-cli/src/test/java/org/apache/commons/cli/GnuParseTest.java
A         
cy-commons-cli/src/test/java/org/apache/commons/cli/LongOptionWithShort.java
A         
cy-commons-cli/src/test/java/org/apache/commons/cli/OptionGroupTest.java
A         
cy-commons-cli/src/test/java/org/apache/commons/cli/ArgumentIsOptionTest.java
A         cy-commons-cli/src/test/java/org/apache/commons/cli/ParseTest.java
A         
cy-commons-cli/src/test/java/org/apache/commons/cli/HelpFormatterExamples.java
A         cy-commons-cli/src/test/java/org/apache/commons/cli/OptionsTest.java
A         
cy-commons-cli/src/test/java/org/apache/commons/cli/ParseRequiredTest.java
A         
cy-commons-cli/src/test/java/org/apache/commons/cli/TestHelpFormatter.java
A         cy-commons-cli/src/test/java/org/apache/commons/cli/ValueTest.java
A         
cy-commons-cli/src/test/java/org/apache/commons/cli/PatternOptionBuilderTest.java
A         cy-commons-cli/src/main
A         cy-commons-cli/src/main/java
A         cy-commons-cli/src/main/java/org
A         cy-commons-cli/src/main/java/org/apache
A         cy-commons-cli/src/main/java/org/apache/commons
A         cy-commons-cli/src/main/java/org/apache/commons/cli
A         
cy-commons-cli/src/main/java/org/apache/commons/cli/CommandLineParser.java
A         
cy-commons-cli/src/main/java/org/apache/commons/cli/UnrecognizedOptionException.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/GnuParser.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/Option.java
A         
cy-commons-cli/src/main/java/org/apache/commons/cli/AlreadySelectedException.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/HelpFormatter.java
A         
cy-commons-cli/src/main/java/org/apache/commons/cli/PatternOptionBuilder.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/Util.java
A         
cy-commons-cli/src/main/java/org/apache/commons/cli/OptionValidator.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/package.html
A         cy-commons-cli/src/main/java/org/apache/commons/cli/OptionBuilder.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/PosixParser.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/TypeHandler.java
A         
cy-commons-cli/src/main/java/org/apache/commons/cli/MissingOptionException.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/OptionGroup.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/CommandLine.java
A         
cy-commons-cli/src/main/java/org/apache/commons/cli/ParseException.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/overview.html
A         cy-commons-cli/src/main/java/org/apache/commons/cli/Options.java
A         
cy-commons-cli/src/main/java/org/apache/commons/cli/MissingArgumentException.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/Parser.java
A         cy-commons-cli/src/main/java/org/apache/commons/cli/BasicParser.java
A         cy-commons-cli/pom.xml
A         integration-test-support
A         integration-test-support/osgi.bnd
A         integration-test-support/src
A         integration-test-support/src/main
A         integration-test-support/src/main/java
A         integration-test-support/src/main/java/org
A         integration-test-support/src/main/java/org/cytoscape
A         integration-test-support/src/main/java/org/cytoscape/integration
A         
integration-test-support/src/main/java/org/cytoscape/integration/ServiceTestSupport.java
A         integration-test-support/pom.xml
A         pom.xml
A         splash-updater-impl
A         splash-updater-impl/osgi.bnd
A         splash-updater-impl/src
A         splash-updater-impl/src/main
A         splash-updater-impl/src/main/java
A         splash-updater-impl/src/main/java/org
A         splash-updater-impl/src/main/java/org/cytoscape
A         splash-updater-impl/src/main/java/org/cytoscape/splash
A         splash-updater-impl/src/main/java/org/cytoscape/splash/internal
A         
splash-updater-impl/src/main/java/org/cytoscape/splash/internal/SplashManipulator.java
A         
splash-updater-impl/src/main/java/org/cytoscape/splash/internal/SplashActivator.java
A         splash-updater-impl/pom.xml
A         task-testing-impl
A         task-testing-impl/osgi.bnd
A         task-testing-impl/src
A         task-testing-impl/src/main
A         task-testing-impl/src/main/java
A         task-testing-impl/src/main/java/org
A         task-testing-impl/src/main/java/org/cytoscape
A         task-testing-impl/src/main/java/org/cytoscape/internal
A         task-testing-impl/src/main/java/org/cytoscape/internal/test
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/InfiniteTaskFactory.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/SharedTableTask.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/WaitAction.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/MultiTunableAction.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/SingleTask.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/MultipleTaskFactory.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/CyActivator.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/InfiniteTask.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/SharedTableTaskFactory.java
A         task-testing-impl/src/main/java/org/cytoscape/internal/test/tunables
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/tunables/ScootersTunableTask.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/tunables/TunablesTestTask.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/tunables/TunablesTestTask2.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/tunables/JustTunables.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/tunables/TunablesTestTask3.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/tunables/ScootersTunableTaskFactory.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/tunables/TunablesTestTaskFactory.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/tunables/TunablesTestTaskFactory2.java
A         
task-testing-impl/src/main/java/org/cytoscape/internal/test/tunables/TunablesTestTaskFactory3.java
A         task-testing-impl/src/main/resources
A         task-testing-impl/src/main/resources/META-INF
A         task-testing-impl/src/main/resources/META-INF/spring
A         
task-testing-impl/src/main/resources/META-INF/spring/bundle-context-osgi.xml-legacy
A         
task-testing-impl/src/main/resources/META-INF/spring/bundle-context.xml-legacy
A         task-testing-impl/pom.xml
 U        .
At revision 30379
Parsing POMs
Downloaded artifact 
http://code.cytoscape.org/nexus/content/repositories/snapshots//org/cytoscape/support-parent/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml
Downloaded artifact 
http://code.cytoscape.org/nexus/content/repositories/snapshots//org/cytoscape/support-parent/3.0.0-alpha9-SNAPSHOT/support-parent-3.0.0-alpha9-20120918.192545-128.pom
Failed to transfer File: 
http://code.cytoscape.org/nexus/content/repositories/biopax-snapshot/org/cytoscape/support-parent/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml
 does not exist
Failed to transfer File: 
http://code.cytoscape.org/nexus/content/repositories/spring-osgi-external/org/cytoscape/support-parent/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml
 does not exist
Failed to transfer File: 
http://code.cytoscape.org/nexus/content/repositories/spring-osgi/org/cytoscape/support-parent/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml
 does not exist
Failed to transfer File: 
http://code.cytoscape.org/nexus/content/repositories/zodiac-release/org/cytoscape/support-parent/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml
 does not exist
Failed to transfer File: 
http://code.cytoscape.org/nexus/content/repositories/zodiac-milestone/org/cytoscape/support-parent/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml
 does not exist
Failed to transfer File: 
http://maven.itextpdf.com/org/cytoscape/support-parent/3.0.0-alpha9-SNAPSHOT/maven-metadata.xml
 does not exist
Modules changed, recalculating dependency graph
[trunk] $ /usr/lib/jvm/default-java/bin/java -Djava.awt.headless=true -Xmx768M 
-XX:MaxPermSize=256M -cp 
/opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.2.jar:/opt/maven/boot/plexus-classworlds-2.4.jar
 org.jvnet.hudson.maven3.agent.Maven3Main /opt/maven 
/var/lib/tomcat6/webapps/jenkins/WEB-INF/lib/remoting-2.11.jar 
/opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.2.jar
 58773
<===[JENKINS REMOTING CAPACITY]===>   channel started
Executing Maven:  -B -f 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/pom.xml>
 deploy
[INFO] Scanning for projects...
mavenExecutionResult exceptions not empty
message : Some problems were encountered while processing the POMs:
[WARNING] 'version' contains an expression but should be a constant. @ 
org.cytoscape:support-parent:${cytoscape.support.version}, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/pom.xml,>
 line 14, column 11
[WARNING] 'version' contains an expression but should be a constant. @ 
org.cytoscape:support-parent:${cytoscape.support.version}, 
/opt/tomcat-home/.m2/repository/org/cytoscape/support-parent/3.0.0-alpha9-SNAPSHOT/support-parent-3.0.0-alpha9-SNAPSHOT.pom,
 line 14, column 11
[ERROR] 'dependencies.dependency.version' for org.cytoscape:cmdline:jar must be 
a valid version but is '${cytoscape.support.version}'. @ 
org.cytoscape:launcher:3.0.0-alpha9-SNAPSHOT, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/launch-framework/launcher/pom.xml,>
 line 56, column 13
[ERROR] 'dependencies.dependency.version' for 
org.cytoscape:swing-application-api:jar must be a valid version but is 
'${cytoscape.api.version}'. @ 
org.cytoscape:task-testing-impl:3.0.0-alpha9-SNAPSHOT, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/task-testing-impl/pom.xml,>
 line 75, column 13
[ERROR] 'dependencies.dependency.version' for org.cytoscape:work-api:jar must 
be a valid version but is '${cytoscape.api.version}'. @ 
org.cytoscape:task-testing-impl:3.0.0-alpha9-SNAPSHOT, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/task-testing-impl/pom.xml,>
 line 80, column 13
[ERROR] 'dependencies.dependency.version' for org.cytoscape:core-task-api:jar 
must be a valid version but is '${cytoscape.api.version}'. @ 
org.cytoscape:task-testing-impl:3.0.0-alpha9-SNAPSHOT, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/task-testing-impl/pom.xml,>
 line 85, column 13
[ERROR] 'dependencies.dependency.version' for org.cytoscape:service-api:jar 
must be a valid version but is '${cytoscape.api.version}'. @ 
org.cytoscape:task-testing-impl:3.0.0-alpha9-SNAPSHOT, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/task-testing-impl/pom.xml,>
 line 90, column 13
[WARNING] 'version' contains an expression but should be a constant. @ line 14, 
column 11

Stack trace : 
org.apache.maven.project.ProjectBuildingException: Some problems were 
encountered while processing the POMs:
[WARNING] 'version' contains an expression but should be a constant. @ 
org.cytoscape:support-parent:${cytoscape.support.version}, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/pom.xml,>
 line 14, column 11
[WARNING] 'version' contains an expression but should be a constant. @ 
org.cytoscape:support-parent:${cytoscape.support.version}, 
/opt/tomcat-home/.m2/repository/org/cytoscape/support-parent/3.0.0-alpha9-SNAPSHOT/support-parent-3.0.0-alpha9-SNAPSHOT.pom,
 line 14, column 11
[ERROR] 'dependencies.dependency.version' for org.cytoscape:cmdline:jar must be 
a valid version but is '${cytoscape.support.version}'. @ 
org.cytoscape:launcher:3.0.0-alpha9-SNAPSHOT, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/launch-framework/launcher/pom.xml,>
 line 56, column 13
[ERROR] 'dependencies.dependency.version' for 
org.cytoscape:swing-application-api:jar must be a valid version but is 
'${cytoscape.api.version}'. @ 
org.cytoscape:task-testing-impl:3.0.0-alpha9-SNAPSHOT, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/task-testing-impl/pom.xml,>
 line 75, column 13
[ERROR] 'dependencies.dependency.version' for org.cytoscape:work-api:jar must 
be a valid version but is '${cytoscape.api.version}'. @ 
org.cytoscape:task-testing-impl:3.0.0-alpha9-SNAPSHOT, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/task-testing-impl/pom.xml,>
 line 80, column 13
[ERROR] 'dependencies.dependency.version' for org.cytoscape:core-task-api:jar 
must be a valid version but is '${cytoscape.api.version}'. @ 
org.cytoscape:task-testing-impl:3.0.0-alpha9-SNAPSHOT, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/task-testing-impl/pom.xml,>
 line 85, column 13
[ERROR] 'dependencies.dependency.version' for org.cytoscape:service-api:jar 
must be a valid version but is '${cytoscape.api.version}'. @ 
org.cytoscape:task-testing-impl:3.0.0-alpha9-SNAPSHOT, 
<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Support/ws/trunk/task-testing-impl/pom.xml,>
 line 90, column 13
[WARNING] 'version' contains an expression but should be a constant. @ line 14, 
column 11

        at 
org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:339)
        at org.apache.maven.DefaultMaven.collectProjects(DefaultMaven.java:632)
        at 
org.apache.maven.DefaultMaven.getProjectsForMavenReactor(DefaultMaven.java:581)
        at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:233)
        at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
        at 
org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:616)
        at 
org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329)
        at 
org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239)
        at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158)
        at hudson.maven.Maven3Builder.call(Maven3Builder.java:112)
        at hudson.maven.Maven3Builder.call(Maven3Builder.java:70)
        at hudson.remoting.UserRequest.perform(UserRequest.java:118)
        at hudson.remoting.UserRequest.perform(UserRequest.java:48)
        at hudson.remoting.Request$2.run(Request.java:287)
        at 
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
        at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
        at java.util.concurrent.FutureTask.run(FutureTask.java:166)
        at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
        at java.lang.Thread.run(Thread.java:636)
channel stopped

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