See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/5/>
------------------------------------------ [...truncated 4724 lines...] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ command-executor-api --- [INFO] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/ws/trunk/command-executor-api/src/test/resources> [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ command-executor-api --- [INFO] [INFO] --- maven-compiler-plugin:2.3.2:testCompile (default-testCompile) @ command-executor-api --- [INFO] No sources to compile [INFO] [INFO] No tests to run. [INFO] Surefire report directory: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/ws/trunk/command-executor-api/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ command-executor-api --- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results[WARNING] Warning building bundle org.cytoscape:command-executor-api:bundle:3.0.0-beta3-SNAPSHOT : Instructions in Private-Package, or -testpackages that are never used: org\.cytoscape\.command\.internal\..*|org\.cytoscape\.command\.internal Classpath: Jar:.,Jar:work-api,Jar:pax-logging-api [WARNING] Warning building bundle org.cytoscape:command-executor-api:bundle:3.0.0-beta3-SNAPSHOT : Instructions in Export-Package that are never used: org\.cytoscape\.command\.internal\..*|org\.cytoscape\.command\.internal Classpath: Jar:.,Jar:work-api,Jar:pax-logging-api [INFO] [INFO] --- maven-bundle-plugin:2.3.4:bundle (default-bundle) @ command-executor-api --- ignoring exception during new ExecutedMojo null [INFO] [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/ws/trunk/command-executor-api/target/command-executor-api-3.0.0-beta3-SNAPSHOT-sources.jar> [INFO] --- maven-source-plugin:2.1.2:jar (attach-sources) @ command-executor-api --- [INFO] [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/ws/trunk/command-executor-api/target/command-executor-api-3.0.0-beta3-SNAPSHOT.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/command-executor-api-3.0.0-beta3-SNAPSHOT.jar [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/ws/trunk/command-executor-api/pom.xml> to /opt/tomcat-home/.m2/repository/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/command-executor-api-3.0.0-beta3-SNAPSHOT.pom [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/ws/trunk/command-executor-api/target/command-executor-api-3.0.0-beta3-SNAPSHOT-sources.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/command-executor-api-3.0.0-beta3-SNAPSHOT-sources.jar [INFO] --- maven-install-plugin:2.4:install (default-install) @ command-executor-api --- [INFO] [INFO] Installing org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/command-executor-api-3.0.0-beta3-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] --- maven-bundle-plugin:2.3.4:install (default-install) @ command-executor-api --- [INFO] Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/maven-metadata.xml [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ command-executor-api --- Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/maven-metadata.xml (2 KB at 19.3 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/command-executor-api-3.0.0-beta3-20120924.184900-141.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/command-executor-api-3.0.0-beta3-20120924.184900-141.jar (4 KB at 55.2 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/command-executor-api-3.0.0-beta3-20120924.184900-141.pom Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/command-executor-api-3.0.0-beta3-20120924.184900-141.pom (3 KB at 36.1 KB/sec) Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/maven-metadata.xml Downloaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/maven-metadata.xml (345 B at 14.0 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/maven-metadata.xml (2 KB at 28.7 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/maven-metadata.xml (345 B at 6.6 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/command-executor-api-3.0.0-beta3-20120924.184900-141-sources.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/command-executor-api-3.0.0-beta3-20120924.184900-141-sources.jar (2 KB at 32.6 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/maven-metadata.xml (2 KB at 27.2 KB/sec) [INFO] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [INFO] --- maven-bundle-plugin:2.3.4:deploy (default-deploy) @ command-executor-api --- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/ws/trunk/command-executor-api/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 API/modules/org.cytoscape$command-executor-api/builds/2012-09-24_13-47-04/archive/org.cytoscape/command-executor-api/3.0.0-beta3-SNAPSHOT/command-executor-api-3.0.0-beta3-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/ws/trunk/command-executor-api/target/command-executor-api-3.0.0-beta3-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 API/modules/org.cytoscape$command-executor-api/builds/2012-09-24_13-47-04/archive/org.cytoscape/command-executor-api/3.0.0-beta3-20120924.184900-141/command-executor-api-3.0.0-beta3-20120924.184900-141.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/ws/trunk/command-executor-api/target/command-executor-api-3.0.0-beta3-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 API/modules/org.cytoscape$command-executor-api/builds/2012-09-24_13-47-04/archive/org.cytoscape/command-executor-api/3.0.0-beta3-20120924.184900-141/command-executor-api-3.0.0-beta3-20120924.184900-141-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape API Parent Project POM .................. SUCCESS [4.472s] [INFO] Cytoscape Event API (event-api) ................... SUCCESS [5.640s] [INFO] Cytoscape Model API (model-api) ................... SUCCESS [3.940s] [INFO] Cytoscape View Model API (viewmodel-api) .......... SUCCESS [3.660s] [INFO] Cytoscape Work API (work-api) ..................... SUCCESS [3.630s] [INFO] Cytoscape Presentation API (presentation-api) ..... SUCCESS [3.302s] [INFO] Cytoscape Property API (property-api) ............. SUCCESS [4.244s] [INFO] Cytoscape VizMap API (vizmap-api) ................. SUCCESS [2.840s] [INFO] Cytoscape Session API (session-api) ............... SUCCESS [2.896s] [INFO] Cytoscape Core Task API (core-task-api) ........... SUCCESS [3.620s] [INFO] Cytoscape Equations API (equations-api) ........... SUCCESS [3.320s] [INFO] Cytoscape IO API (io-api) ......................... SUCCESS [3.632s] [INFO] Cytoscape Layout API (layout-api) ................. SUCCESS [2.763s] [INFO] Cytoscape Groups API (group-api) .................. SUCCESS [2.697s] [INFO] Cytoscape Custom Graphics API (custom-graphics-api) SUCCESS [2.392s] [INFO] Cytoscape Service API (service-api) ............... SUCCESS [3.575s] [INFO] Cytoscape Webservice API (webservice-api) ......... SUCCESS [2.692s] [INFO] Cytoscape Data Source API (datasource-api) ........ SUCCESS [2.904s] [INFO] Cytoscape Application API (application-api) ....... SUCCESS [4.686s] [INFO] Cytoscape App API (app-api) ....................... SUCCESS [4.540s] [INFO] Cytoscape Work Swing API (work-swing-api) ......... SUCCESS [3.372s] [INFO] Cytoscape Swing Application API (swing-application-api) SUCCESS [3.388s] [INFO] Cytoscape VizMap GUI API (vizmap-gui-api) ......... SUCCESS [3.807s] [INFO] Cytoscape Swing Utility API (swing-util-api) ...... SUCCESS [4.204s] [INFO] Cytoscape Webservice Swing API (webservice-swing-api) SUCCESS [3.455s] [INFO] Cytoscape Swing App API (swing-app-api) ........... SUCCESS [6.068s] [INFO] Cytoscape Command Executor API (command-executor-api) SUCCESS [1.700s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 1:53.325s [INFO] Finished at: Mon Sep 24 13:49:00 GMT-05:00 2012 [INFO] Final Memory: 151M/363M [INFO] ------------------------------------------------------------------------ channel stopped [trunk] $ /opt/maven/bin/mvn -f "<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20API/ws/trunk/pom.xml";> -e -B sonar:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar?useUnicode=true&characterEncoding=utf8 -Dsonar.host.url=http://code.cytoscape.org/sonar [INFO] Error stacktraces are turned on. [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] Cytoscape API Parent Project POM [INFO] Cytoscape Event API (event-api) [INFO] Cytoscape Model API (model-api) [INFO] Cytoscape View Model API (viewmodel-api) [INFO] Cytoscape Work API (work-api) [INFO] Cytoscape Presentation API (presentation-api) [INFO] Cytoscape Property API (property-api) [INFO] Cytoscape VizMap API (vizmap-api) [INFO] Cytoscape Session API (session-api) [INFO] Cytoscape Core Task API (core-task-api) [INFO] Cytoscape Equations API (equations-api) [INFO] Cytoscape IO API (io-api) [INFO] Cytoscape Layout API (layout-api) [INFO] Cytoscape Groups API (group-api) [INFO] Cytoscape Custom Graphics API (custom-graphics-api) [INFO] Cytoscape Service API (service-api) [INFO] Cytoscape Webservice API (webservice-api) [INFO] Cytoscape Data Source API (datasource-api) [INFO] Cytoscape Application API (application-api) [INFO] Cytoscape App API (app-api) [INFO] Cytoscape Work Swing API (work-swing-api) [INFO] Cytoscape Swing Application API (swing-application-api) [INFO] Cytoscape VizMap GUI API (vizmap-gui-api) [INFO] Cytoscape Swing Utility API (swing-util-api) [INFO] Cytoscape Webservice Swing API (webservice-swing-api) [INFO] Cytoscape Swing App API (swing-app-api) [INFO] Cytoscape Command Executor API (command-executor-api) [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape API Parent Project POM 3.0.0-beta3-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- sonar-maven-plugin:2.0:sonar (default-cli) @ api-parent --- [INFO] Sonar version: 2.10 [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape API Parent Project POM .................. FAILURE [1.174s] [INFO] Cytoscape Event API (event-api) ................... SKIPPED [INFO] Cytoscape Model API (model-api) ................... SKIPPED [INFO] Cytoscape View Model API (viewmodel-api) .......... SKIPPED [INFO] Cytoscape Work API (work-api) ..................... SKIPPED [INFO] Cytoscape Presentation API (presentation-api) ..... SKIPPED [INFO] Cytoscape Property API (property-api) ............. SKIPPED [INFO] Cytoscape VizMap API (vizmap-api) ................. SKIPPED [INFO] Cytoscape Session API (session-api) ............... SKIPPED [INFO] Cytoscape Core Task API (core-task-api) ........... SKIPPED [INFO] Cytoscape Equations API (equations-api) ........... SKIPPED [INFO] Cytoscape IO API (io-api) ......................... SKIPPED [INFO] Cytoscape Layout API (layout-api) ................. SKIPPED [INFO] Cytoscape Groups API (group-api) .................. SKIPPED [INFO] Cytoscape Custom Graphics API (custom-graphics-api) SKIPPED [INFO] Cytoscape Service API (service-api) ............... SKIPPED [INFO] Cytoscape Webservice API (webservice-api) ......... SKIPPED [INFO] Cytoscape Data Source API (datasource-api) ........ SKIPPED [INFO] Cytoscape Application API (application-api) ....... SKIPPED [INFO] Cytoscape App API (app-api) ....................... SKIPPED [INFO] Cytoscape Work Swing API (work-swing-api) ......... SKIPPED [INFO] Cytoscape Swing Application API (swing-application-api) SKIPPED [INFO] Cytoscape VizMap GUI API (vizmap-gui-api) ......... SKIPPED [INFO] Cytoscape Swing Utility API (swing-util-api) ...... SKIPPED [INFO] Cytoscape Webservice Swing API (webservice-swing-api) SKIPPED [INFO] Cytoscape Swing App API (swing-app-api) ........... SKIPPED [INFO] Cytoscape Command Executor API (command-executor-api) SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 1.905s [INFO] Finished at: Mon Sep 24 13:49:04 GMT-05:00 2012 [INFO] Final Memory: 11M/28M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.codehaus.mojo:sonar-maven-plugin:2.0:sonar (default-cli) on project api-parent: Can not execute Sonar: PicoLifecycleException: method 'public void org.sonar.jpa.session.AbstractDatabaseConnector.start()', instance 'org.sonar.jpa.session.DriverDatabaseConnector@1a9cf52, java.lang.RuntimeException: wrapper: Database schema must be updated [version/required=-1/216]. Please browse to your sonar homepage. -> [Help 1] org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.codehaus.mojo:sonar-maven-plugin:2.0:sonar (default-cli) on project api-parent: Can not execute Sonar at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537) at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196) at org.apache.maven.cli.MavenCli.main(MavenCli.java:141) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:409) at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:352) Caused by: org.apache.maven.plugin.MojoExecutionException: Can not execute Sonar at org.codehaus.mojo.sonar.Bootstraper.executeMojo(Bootstraper.java:118) at org.codehaus.mojo.sonar.Bootstraper.start(Bootstraper.java:65) at org.codehaus.mojo.sonar.SonarMojo.execute(SonarMojo.java:90) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 19 more Caused by: org.picocontainer.PicoLifecycleException: PicoLifecycleException: method 'public void org.sonar.jpa.session.AbstractDatabaseConnector.start()', instance 'org.sonar.jpa.session.DriverDatabaseConnector@1a9cf52, java.lang.RuntimeException: wrapper at org.picocontainer.monitors.NullComponentMonitor.lifecycleInvocationFailed(NullComponentMonitor.java:77) at org.picocontainer.lifecycle.ReflectionLifecycleStrategy.monitorAndThrowReflectionLifecycleException(ReflectionLifecycleStrategy.java:132) at org.picocontainer.lifecycle.ReflectionLifecycleStrategy.invokeMethod(ReflectionLifecycleStrategy.java:115) at org.picocontainer.lifecycle.ReflectionLifecycleStrategy.start(ReflectionLifecycleStrategy.java:89) at org.picocontainer.adapters.InstanceAdapter.start(InstanceAdapter.java:108) at org.picocontainer.behaviors.AbstractBehavior.start(AbstractBehavior.java:169) at org.picocontainer.behaviors.Stored$RealComponentLifecycle.start(Stored.java:132) at org.picocontainer.behaviors.Stored.start(Stored.java:110) at org.picocontainer.DefaultPicoContainer.potentiallyStartAdapter(DefaultPicoContainer.java:996) at org.picocontainer.DefaultPicoContainer.startAdapters(DefaultPicoContainer.java:989) at org.picocontainer.DefaultPicoContainer.start(DefaultPicoContainer.java:746) at org.sonar.batch.bootstrap.Module.start(Module.java:88) at org.sonar.batch.Batch.execute(Batch.java:74) at org.sonar.maven3.SonarMojo.executeBatch(SonarMojo.java:147) at org.sonar.maven3.SonarMojo.execute(SonarMojo.java:136) at org.codehaus.mojo.sonar.Bootstraper.executeMojo(Bootstraper.java:113) ... 23 more Caused by: java.lang.RuntimeException: wrapper at org.picocontainer.lifecycle.ReflectionLifecycleStrategy.monitorAndThrowReflectionLifecycleException(ReflectionLifecycleStrategy.java:130) ... 37 more Caused by: org.sonar.jpa.session.DatabaseException: Database schema must be updated [version/required=-1/216]. Please browse to your sonar homepage. at org.sonar.jpa.session.AbstractDatabaseConnector.start(AbstractDatabaseConnector.java:109) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.picocontainer.lifecycle.ReflectionLifecycleStrategy.invokeMethod(ReflectionLifecycleStrategy.java:110) ... 36 more [ERROR] [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException Sonar analysis completed: FAILURE Build step 'Sonar' changed build result to FAILURE Build step 'Sonar' marked build as failure -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
