Author: kono
Date: 2012-09-26 11:58:57 -0700 (Wed, 26 Sep 2012)
New Revision: 30491
Modified:
core3/gui-distribution/trunk/assembly/src/main/resources/sampleData/galFiltered.graphml
Log:
refs #1044 Broken GraphML file fixed.
Modified:
core3/gui-distribution/trunk/assembly/src/main/resources/sampleData/galFiltered.graphml
===================================================================
---
core3/gui-distribution/trunk/assembly/src/main/resources/sampleData/galFiltered.graphml
2012-09-26 17:39:43 UTC (rev 30490)
+++
core3/gui-distribution/trunk/assembly/src/main/resources/sampleData/galFiltered.graphml
2012-09-26 18:58:57 UTC (rev 30491)
@@ -1,5 +1,50 @@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<graphml>
+ <key attr.name="Family Description" attr.type="string" for="node"
id="Family Description"/>
+ <key attr.name="annotation.DB_Object_ID" attr.type="string" for="node"
id="annotation.DB_Object_ID"/>
+ <key attr.name="annotation.DB_Object_Type" attr.type="string" for="node"
id="annotation.DB_Object_Type"/>
+ <key attr.name="annotation.DB" attr.type="string" for="node"
id="annotation.DB"/>
+ <key attr.name="annotation.Qualifier" attr.type="string" for="node"
id="annotation.Qualifier"/>
+ <key attr.name="gal1RGexp" attr.type="double" for="node" id="gal1RGexp"/>
+ <key attr.name="Pathway Link" attr.type="string" for="node" id="Pathway
Link"/>
+ <key attr.name="annotation.Taxon" attr.type="string" for="node"
id="annotation.Taxon"/>
+ <key attr.name="Unified UniProt Accession" attr.type="string" for="node"
id="Unified UniProt Accession"/>
+ <key attr.name="annotation.Assigned_by" attr.type="string" for="node"
id="annotation.Assigned_by"/>
+ <key attr.name="gal80Rsig" attr.type="double" for="node" id="gal80Rsig"/>
+ <key attr.name="Locus Tag" attr.type="string" for="node" id="Locus Tag"/>
+ <key attr.name="GeneRIF ID" attr.type="string" for="node" id="GeneRIF ID"/>
+ <key attr.name="gal1RGsig" attr.type="double" for="node" id="gal1RGsig"/>
+ <key attr.name="SGD ID" attr.type="string" for="node" id="SGD ID"/>
+ <key attr.name="annotation.GO MOLECULAR_FUNCTION" attr.type="string"
for="node" id="annotation.GO MOLECULAR_FUNCTION"/>
+ <key attr.name="GeneRIF" attr.type="string" for="node" id="GeneRIF"/>
+ <key attr.name="annotation.DB:Reference" attr.type="string" for="node"
id="annotation.DB:Reference"/>
+ <key attr.name="Pathway" attr.type="string" for="node" id="Pathway"/>
+ <key attr.name="Speices" attr.type="string" for="node" id="Speices"/>
+ <key attr.name="EntrezGene ID" attr.type="string" for="node"
id="EntrezGene ID"/>
+ <key attr.name="gal80Rexp" attr.type="double" for="node" id="gal80Rexp"/>
+ <key attr.name="annotation.DB_Object_Name" attr.type="string" for="node"
id="annotation.DB_Object_Name"/>
+ <key attr.name="Official Symbol" attr.type="string" for="node"
id="Official Symbol"/>
+ <key attr.name="PubMed ID" attr.type="string" for="node" id="PubMed ID"/>
+ <key attr.name="annotation.GO CELLULAR_COMPONENT" attr.type="string"
for="node" id="annotation.GO CELLULAR_COMPONENT"/>
+ <key attr.name="annotation.Date" attr.type="string" for="node"
id="annotation.Date"/>
+ <key attr.name="PDB ID" attr.type="string" for="node" id="PDB ID"/>
+ <key attr.name="Source Database ID" attr.type="string" for="node"
id="Source Database ID"/>
+ <key attr.name="Gene Type" attr.type="string" for="node" id="Gene Type"/>
+ <key attr.name="Source Database" attr.type="string" for="node" id="Source
Database"/>
+ <key attr.name="Additional Links" attr.type="string" for="node"
id="Additional Links"/>
+ <key attr.name="canonicalName" attr.type="string" for="node"
id="canonicalName"/>
+ <key attr.name="gal4RGexp" attr.type="double" for="node" id="gal4RGexp"/>
+ <key attr.name="Ensembl Family ID" attr.type="string" for="node"
id="Ensembl Family ID"/>
+ <key attr.name="annotation.With (or) From" attr.type="string" for="node"
id="annotation.With (or) From"/>
+ <key attr.name="gal4RGsig" attr.type="double" for="node" id="gal4RGsig"/>
+ <key attr.name="annotation.Evidence" attr.type="string" for="node"
id="annotation.Evidence"/>
+ <key attr.name="Degree" attr.type="int" for="node" id="Degree"/>
+ <key attr.name="annotation.GO BIOLOGICAL_PROCESS" attr.type="string"
for="node" id="annotation.GO BIOLOGICAL_PROCESS"/>
+ <key attr.name="SGD symbol" attr.type="string" for="node" id="SGD symbol"/>
+ <key attr.name="Unified UniProt ID" attr.type="string" for="node"
id="Unified UniProt ID"/>
+ <key attr.name="canonicalName" attr.type="string" for="node"
id="canonicalName"/>
+ <key attr.name="interaction" attr.type="string" for="node"
id="interaction"/>
+
<graph edgedefault="directed" id="galFiltered.sif">
<node id="YNL116W">
<data key="Family Description">[AMBIGUOUS]</data>
@@ -15804,48 +15849,4 @@
<data key="interaction">pp</data>
</edge>
</graph>
- <key attr.name="Family Description" attr.type="string" for="node"
id="Family Description"/>
- <key attr.name="annotation.DB_Object_ID" attr.type="string" for="node"
id="annotation.DB_Object_ID"/>
- <key attr.name="annotation.DB_Object_Type" attr.type="string" for="node"
id="annotation.DB_Object_Type"/>
- <key attr.name="annotation.DB" attr.type="string" for="node"
id="annotation.DB"/>
- <key attr.name="annotation.Qualifier" attr.type="string" for="node"
id="annotation.Qualifier"/>
- <key attr.name="gal1RGexp" attr.type="double" for="node" id="gal1RGexp"/>
- <key attr.name="Pathway Link" attr.type="string" for="node" id="Pathway
Link"/>
- <key attr.name="annotation.Taxon" attr.type="string" for="node"
id="annotation.Taxon"/>
- <key attr.name="Unified UniProt Accession" attr.type="string" for="node"
id="Unified UniProt Accession"/>
- <key attr.name="annotation.Assigned_by" attr.type="string" for="node"
id="annotation.Assigned_by"/>
- <key attr.name="gal80Rsig" attr.type="double" for="node" id="gal80Rsig"/>
- <key attr.name="Locus Tag" attr.type="string" for="node" id="Locus Tag"/>
- <key attr.name="GeneRIF ID" attr.type="string" for="node" id="GeneRIF ID"/>
- <key attr.name="gal1RGsig" attr.type="double" for="node" id="gal1RGsig"/>
- <key attr.name="SGD ID" attr.type="string" for="node" id="SGD ID"/>
- <key attr.name="annotation.GO MOLECULAR_FUNCTION" attr.type="string"
for="node" id="annotation.GO MOLECULAR_FUNCTION"/>
- <key attr.name="GeneRIF" attr.type="string" for="node" id="GeneRIF"/>
- <key attr.name="annotation.DB:Reference" attr.type="string" for="node"
id="annotation.DB:Reference"/>
- <key attr.name="Pathway" attr.type="string" for="node" id="Pathway"/>
- <key attr.name="Speices" attr.type="string" for="node" id="Speices"/>
- <key attr.name="EntrezGene ID" attr.type="string" for="node"
id="EntrezGene ID"/>
- <key attr.name="gal80Rexp" attr.type="double" for="node" id="gal80Rexp"/>
- <key attr.name="annotation.DB_Object_Name" attr.type="string" for="node"
id="annotation.DB_Object_Name"/>
- <key attr.name="Official Symbol" attr.type="string" for="node"
id="Official Symbol"/>
- <key attr.name="PubMed ID" attr.type="string" for="node" id="PubMed ID"/>
- <key attr.name="annotation.GO CELLULAR_COMPONENT" attr.type="string"
for="node" id="annotation.GO CELLULAR_COMPONENT"/>
- <key attr.name="annotation.Date" attr.type="string" for="node"
id="annotation.Date"/>
- <key attr.name="PDB ID" attr.type="string" for="node" id="PDB ID"/>
- <key attr.name="Source Database ID" attr.type="string" for="node"
id="Source Database ID"/>
- <key attr.name="Gene Type" attr.type="string" for="node" id="Gene Type"/>
- <key attr.name="Source Database" attr.type="string" for="node" id="Source
Database"/>
- <key attr.name="Additional Links" attr.type="string" for="node"
id="Additional Links"/>
- <key attr.name="canonicalName" attr.type="string" for="node"
id="canonicalName"/>
- <key attr.name="gal4RGexp" attr.type="double" for="node" id="gal4RGexp"/>
- <key attr.name="Ensembl Family ID" attr.type="string" for="node"
id="Ensembl Family ID"/>
- <key attr.name="annotation.With (or) From" attr.type="string" for="node"
id="annotation.With (or) From"/>
- <key attr.name="gal4RGsig" attr.type="double" for="node" id="gal4RGsig"/>
- <key attr.name="annotation.Evidence" attr.type="string" for="node"
id="annotation.Evidence"/>
- <key attr.name="Degree" attr.type="int" for="node" id="Degree"/>
- <key attr.name="annotation.GO BIOLOGICAL_PROCESS" attr.type="string"
for="node" id="annotation.GO BIOLOGICAL_PROCESS"/>
- <key attr.name="SGD symbol" attr.type="string" for="node" id="SGD symbol"/>
- <key attr.name="Unified UniProt ID" attr.type="string" for="node"
id="Unified UniProt ID"/>
- <key attr.name="canonicalName" attr.type="string" for="node"
id="canonicalName"/>
- <key attr.name="interaction" attr.type="string" for="node"
id="interaction"/>
</graphml>
--
You received this message because you are subscribed to the Google Groups
"cytoscape-cvs" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/cytoscape-cvs?hl=en.
