See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/1774/>
------------------------------------------ [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape PSI-MI Impl (psi-mi-impl) 3.0.0-beta2-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/opt/jdk1.6.0_32/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, junit:junit:jar:4.8.1:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd> [INFO] schemaIncludes:[MIF1.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd> [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.psi_mi.internal.schema.mi1 [INFO] generateDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/MIF1> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/MIF1/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd/MIF1.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/MIF1> generatePackage=org.cytoscape.psi_mi.internal.schema.mi1 schemaLanguage=null schemas=[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd/MIF1.xsd]> bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@12e38f5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/MIF1/META-INF/sun-jaxb.episode]]> Using java.util.ServiceLoader [INFO] File [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd/MIF1.xsd]> was changed since the last build. [INFO] File [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/pom.xml]> was changed since the last build. [INFO] Checking up-to-date depends [[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd/MIF1.xsd,> <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/pom.xml]].> [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1,349,485,385,000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] --- maven-jaxb2-plugin:0.8.1:generate (mi1) @ psi-mi-impl --- [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/MIF1].> [INFO] Cleaning package directories. [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/AttributeListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/AvailabilityType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/BaseLocationType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/BibrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/BioSourceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/CvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/DbReferenceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/EntrySet.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ExperimentType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/FeatureType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/FullNameType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/InteractionElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/IntervalType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/LabelType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/NamesType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ObjectFactory.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/OpenCvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/PositionType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ProteinInteractorType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ProteinParticipantType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/RefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/XrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/package-info.java [INFO] Finished execution. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (mi25) @ psi-mi-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/opt/jdk1.6.0_32/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, junit:junit:jar:4.8.1:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd> [INFO] schemaIncludes:[MIF25.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd> [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.psi_mi.internal.schema.mi25 [INFO] generateDirectory:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/MIF25> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/MIF25/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd/MIF25.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/MIF25> generatePackage=org.cytoscape.psi_mi.internal.schema.mi25 schemaLanguage=null schemas=[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd/MIF25.xsd]> bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@179fe76 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/MIF25/META-INF/sun-jaxb.episode]]> Using java.util.ServiceLoader [INFO] File [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd/MIF25.xsd]> was changed since the last build. [INFO] File [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/pom.xml]> was changed since the last build. [INFO] Checking up-to-date depends [[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/main/xsd/MIF25.xsd,> <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/pom.xml]].> [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1,349,485,385,000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/MIF25].> [INFO] Cleaning package directories. [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/AttributeListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/AvailabilityType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BaseLocationType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BibrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BioSourceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ConfidenceListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ConfidenceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/CvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/DbReferenceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/EntrySet.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ExperimentRefListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ExperimentType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/FeatureElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/FullNameType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/InteractionElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/InteractorElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/IntervalType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/LabelType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/NamesType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ObjectFactory.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/OpenCvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ParameterType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ParticipantType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/PositionType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/XrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/package-info.java [INFO] Finished execution. [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 1 resource [INFO] Copying 1 resource [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ psi-mi-impl --- [INFO] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ psi-mi-impl --- [INFO] Compiling 85 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/classes> [INFO] [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 14 resources [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ psi-mi-impl --- [INFO] [INFO] --- maven-compiler-plugin:2.3.2:testCompile (default-testCompile) @ psi-mi-impl --- [INFO] Compiling 12 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/target/test-classes> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/src/test/java/org/cytoscape/psi_mi/internal/plugin/PsiMiNetworkViewReaderTest.java>:[53,-1] cannot access org.cytoscape.view.model.View bad class file: org/cytoscape/view/model/View.class(org/cytoscape/view/model:View.class) unable to access file: corrupted zip file [INFO] 1 error [INFO] ------------------------------------------------------------- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$psi-mi-impl/ws/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$psi-mi-impl/builds/2012-10-05_20-03-50/archive/org.cytoscape/psi-mi-impl/3.0.0-beta2-SNAPSHOT/psi-mi-impl-3.0.0-beta2-SNAPSHOT.pom -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
